Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0441 and Rru_A0442 are separated by 22 nucleotides Rru_A0442 and Rru_A0443 are separated by 93 nucleotides Rru_A0443 and Rru_A0444 are separated by 205 nucleotides
Rru_A0441: Rru_A0441 - chemotaxis sensory transducer (NCBI), at 518,604 to 520,565
_A0441
Rru_A0442: Rru_A0442 - FAD linked oxidase-like (NCBI), at 520,588 to 522,024
_A0442
Rru_A0443: Rru_A0443 - hypothetical protein (NCBI), at 522,118 to 522,768
_A0443
Rru_A0444: Rru_A0444 - Sua5/YciO/YrdC/YwlC (NCBI), at 522,974 to 523,942
_A0444
Position (kb) 520
521
522
523 Strain fitness (log2 ratio) -2
-1
0
1
2 at 520.564 kb on - strand at 520.564 kb on - strand at 522.068 kb on - strand at 522.082 kb on + strand at 522.082 kb on + strand at 522.082 kb on + strand at 522.083 kb on - strand at 522.083 kb on - strand at 522.083 kb on - strand at 522.083 kb on - strand at 522.083 kb on - strand at 522.181 kb on + strand at 522.223 kb on + strand, within Rru_A0443 at 522.410 kb on + strand, within Rru_A0443 at 522.418 kb on - strand, within Rru_A0443 at 522.546 kb on - strand, within Rru_A0443 at 522.562 kb on - strand, within Rru_A0443 at 522.563 kb on + strand, within Rru_A0443 at 522.563 kb on + strand, within Rru_A0443 at 522.563 kb on + strand, within Rru_A0443 at 522.564 kb on - strand, within Rru_A0443 at 522.564 kb on - strand, within Rru_A0443 at 522.564 kb on - strand, within Rru_A0443 at 522.564 kb on - strand, within Rru_A0443 at 522.564 kb on - strand, within Rru_A0443 at 522.564 kb on - strand, within Rru_A0443 at 522.617 kb on + strand, within Rru_A0443 at 522.617 kb on + strand, within Rru_A0443 at 522.617 kb on + strand, within Rru_A0443 at 522.618 kb on - strand, within Rru_A0443 at 522.618 kb on - strand, within Rru_A0443 at 522.618 kb on - strand, within Rru_A0443 at 522.618 kb on - strand, within Rru_A0443 at 522.618 kb on - strand, within Rru_A0443 at 522.803 kb on + strand at 522.803 kb on + strand at 522.803 kb on + strand at 522.804 kb on - strand at 522.804 kb on - strand at 522.889 kb on + strand at 522.889 kb on + strand at 522.970 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 520,564 - +0.5 520,564 - +0.8 522,068 - +0.0 522,082 + +0.8 522,082 + +1.2 522,082 + +1.9 522,083 - +0.4 522,083 - +0.0 522,083 - +1.2 522,083 - +0.0 522,083 - +1.0 522,181 + +0.1 522,223 + Rru_A0443 0.16 -1.0 522,410 + Rru_A0443 0.45 +1.4 522,418 - Rru_A0443 0.46 +0.8 522,546 - Rru_A0443 0.66 +1.4 522,562 - Rru_A0443 0.68 -1.6 522,563 + Rru_A0443 0.68 +0.0 522,563 + Rru_A0443 0.68 +1.2 522,563 + Rru_A0443 0.68 +0.0 522,564 - Rru_A0443 0.69 +0.5 522,564 - Rru_A0443 0.69 +1.4 522,564 - Rru_A0443 0.69 +2.0 522,564 - Rru_A0443 0.69 +1.6 522,564 - Rru_A0443 0.69 -0.1 522,564 - Rru_A0443 0.69 +0.9 522,617 + Rru_A0443 0.77 +1.4 522,617 + Rru_A0443 0.77 +1.4 522,617 + Rru_A0443 0.77 +0.4 522,618 - Rru_A0443 0.77 +0.0 522,618 - Rru_A0443 0.77 -2.2 522,618 - Rru_A0443 0.77 +0.0 522,618 - Rru_A0443 0.77 +0.4 522,618 - Rru_A0443 0.77 +0.0 522,803 + +0.0 522,803 + +0.0 522,803 + +1.0 522,804 - +0.8 522,804 - +1.2 522,889 + +0.8 522,889 + +0.0 522,970 - +1.4
Or see this region's nucleotide sequence