Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0340 and Rru_A0341 are separated by 259 nucleotides Rru_A0341 and Rru_A0342 overlap by 4 nucleotides Rru_A0342 and Rru_A0343 overlap by 11 nucleotides Rru_A0343 and Rru_A0344 are separated by 12 nucleotides
Rru_A0340: Rru_A0340 - CRISPR-associated helicase Cas3, core (NCBI), at 411,275 to 413,932
_A0340
Rru_A0341: Rru_A0341 - hypothetical protein (NCBI), at 414,192 to 415,475
_A0341
Rru_A0342: Rru_A0342 - hypothetical protein (NCBI), at 415,472 to 415,879
_A0342
Rru_A0343: Rru_A0343 - hypothetical protein (NCBI), at 415,869 to 416,432
_A0343
Rru_A0344: Rru_A0344 - CRISPR-associated protein, CT1975 (NCBI), at 416,445 to 417,590
_A0344
Position (kb) 414
415
416 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 413.346 kb on + strand, within Rru_A0340 at 413.346 kb on + strand, within Rru_A0340 at 413.346 kb on + strand, within Rru_A0340 at 413.347 kb on - strand, within Rru_A0340 at 413.414 kb on + strand, within Rru_A0340 at 413.570 kb on + strand, within Rru_A0340 at 413.570 kb on + strand, within Rru_A0340 at 413.571 kb on - strand, within Rru_A0340 at 413.583 kb on + strand, within Rru_A0340 at 413.583 kb on + strand, within Rru_A0340 at 413.583 kb on + strand, within Rru_A0340 at 413.583 kb on + strand, within Rru_A0340 at 413.584 kb on - strand, within Rru_A0340 at 413.584 kb on - strand, within Rru_A0340 at 413.584 kb on - strand, within Rru_A0340 at 413.584 kb on - strand, within Rru_A0340 at 413.584 kb on - strand, within Rru_A0340 at 413.584 kb on - strand, within Rru_A0340 at 413.584 kb on - strand, within Rru_A0340 at 413.584 kb on - strand, within Rru_A0340 at 413.663 kb on + strand, within Rru_A0340 at 413.992 kb on + strand at 414.116 kb on + strand at 414.188 kb on + strand at 414.332 kb on + strand, within Rru_A0341 at 414.332 kb on + strand, within Rru_A0341 at 414.332 kb on + strand, within Rru_A0341 at 414.332 kb on + strand, within Rru_A0341 at 415.896 kb on + strand at 416.413 kb on + strand at 416.414 kb on - strand at 416.430 kb on + strand at 416.430 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 413,346 + Rru_A0340 0.78 +0.1 413,346 + Rru_A0340 0.78 +0.0 413,346 + Rru_A0340 0.78 +0.5 413,347 - Rru_A0340 0.78 +0.6 413,414 + Rru_A0340 0.80 +0.6 413,570 + Rru_A0340 0.86 +0.0 413,570 + Rru_A0340 0.86 +0.0 413,571 - Rru_A0340 0.86 +0.5 413,583 + Rru_A0340 0.87 +0.0 413,583 + Rru_A0340 0.87 +0.3 413,583 + Rru_A0340 0.87 +0.0 413,583 + Rru_A0340 0.87 +0.6 413,584 - Rru_A0340 0.87 +0.0 413,584 - Rru_A0340 0.87 +1.3 413,584 - Rru_A0340 0.87 +1.0 413,584 - Rru_A0340 0.87 +0.9 413,584 - Rru_A0340 0.87 +0.0 413,584 - Rru_A0340 0.87 +0.0 413,584 - Rru_A0340 0.87 -1.0 413,584 - Rru_A0340 0.87 +1.8 413,663 + Rru_A0340 0.90 +0.0 413,992 + +1.0 414,116 + +0.0 414,188 + -1.0 414,332 + Rru_A0341 0.11 +0.0 414,332 + Rru_A0341 0.11 +0.0 414,332 + Rru_A0341 0.11 -3.4 414,332 + Rru_A0341 0.11 -1.0 415,896 + -1.0 416,413 + +0.0 416,414 - +0.0 416,430 + +1.8 416,430 + +1.4
Or see this region's nucleotide sequence