Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0330

Experiment: Succinic Acid; Light intensity 9 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0328 and Rru_A0329 are separated by 330 nucleotidesRru_A0329 and Rru_A0330 are separated by 59 nucleotidesRru_A0330 and Rru_A0331 are separated by 54 nucleotides Rru_A0328: Rru_A0328 - Lysine exporter protein (LYSE/YGGA) (NCBI), at 400,635 to 401,267 _A0328 Rru_A0329: Rru_A0329 - hypothetical protein (NCBI), at 401,598 to 401,993 _A0329 Rru_A0330: Rru_A0330 - Transcriptional Regulator, LysR family (NCBI), at 402,053 to 403,063 _A0330 Rru_A0331: Rru_A0331 - Protein of unknown function DUF6, transmembrane (NCBI), at 403,118 to 404,086 _A0331 Position (kb) 402 403 404Strain fitness (log2 ratio) -2 -1 0 1 2at 401.127 kb on + strand, within Rru_A0328at 401.127 kb on + strand, within Rru_A0328at 401.128 kb on - strand, within Rru_A0328at 401.128 kb on - strand, within Rru_A0328at 401.128 kb on - strand, within Rru_A0328at 401.128 kb on - strand, within Rru_A0328at 401.128 kb on - strand, within Rru_A0328at 401.128 kb on - strand, within Rru_A0328at 401.128 kb on - strand, within Rru_A0328at 401.174 kb on + strand, within Rru_A0328at 401.266 kb on - strandat 401.288 kb on + strandat 401.288 kb on + strandat 401.289 kb on - strandat 401.403 kb on + strandat 401.403 kb on + strandat 401.403 kb on + strandat 401.403 kb on + strandat 401.403 kb on + strandat 401.403 kb on + strandat 401.404 kb on - strandat 401.556 kb on + strandat 401.556 kb on + strandat 401.556 kb on + strandat 401.557 kb on - strandat 401.574 kb on + strandat 401.574 kb on + strandat 401.575 kb on - strandat 401.575 kb on - strandat 401.575 kb on - strandat 401.575 kb on - strandat 401.575 kb on - strandat 401.575 kb on - strandat 401.596 kb on - strandat 401.811 kb on + strand, within Rru_A0329at 401.811 kb on + strand, within Rru_A0329at 401.812 kb on - strand, within Rru_A0329at 401.812 kb on - strand, within Rru_A0329at 401.812 kb on - strand, within Rru_A0329at 401.991 kb on + strandat 401.992 kb on - strandat 402.537 kb on + strand, within Rru_A0330at 402.537 kb on + strand, within Rru_A0330at 402.538 kb on - strand, within Rru_A0330at 402.538 kb on - strand, within Rru_A0330at 402.538 kb on - strand, within Rru_A0330at 402.538 kb on - strand, within Rru_A0330at 402.538 kb on - strand, within Rru_A0330at 402.538 kb on - strand, within Rru_A0330at 402.988 kb on - strandat 402.989 kb on + strandat 402.989 kb on + strandat 402.990 kb on - strandat 403.049 kb on + strandat 403.050 kb on - strandat 403.238 kb on + strand, within Rru_A0331at 403.238 kb on + strand, within Rru_A0331at 403.238 kb on + strand, within Rru_A0331at 403.238 kb on + strand, within Rru_A0331at 403.238 kb on + strand, within Rru_A0331at 403.238 kb on + strand, within Rru_A0331at 403.239 kb on - strand, within Rru_A0331at 403.239 kb on - strand, within Rru_A0331at 403.239 kb on - strand, within Rru_A0331at 403.239 kb on - strand, within Rru_A0331at 403.244 kb on + strand, within Rru_A0331at 403.245 kb on - strand, within Rru_A0331at 403.245 kb on - strand, within Rru_A0331at 403.327 kb on - strand, within Rru_A0331at 403.327 kb on - strand, within Rru_A0331at 403.327 kb on - strand, within Rru_A0331at 403.415 kb on + strand, within Rru_A0331at 403.415 kb on + strand, within Rru_A0331at 403.415 kb on + strand, within Rru_A0331at 403.415 kb on + strand, within Rru_A0331at 403.416 kb on - strand, within Rru_A0331at 403.416 kb on - strand, within Rru_A0331at 403.478 kb on + strand, within Rru_A0331at 403.478 kb on + strand, within Rru_A0331at 403.479 kb on - strand, within Rru_A0331at 403.562 kb on + strand, within Rru_A0331at 403.562 kb on + strand, within Rru_A0331at 403.562 kb on + strand, within Rru_A0331at 403.562 kb on + strand, within Rru_A0331at 403.562 kb on + strand, within Rru_A0331at 403.563 kb on - strand, within Rru_A0331at 403.563 kb on - strand, within Rru_A0331at 403.563 kb on - strand, within Rru_A0331at 403.661 kb on + strand, within Rru_A0331at 403.661 kb on + strand, within Rru_A0331at 403.662 kb on - strand, within Rru_A0331at 403.662 kb on - strand, within Rru_A0331at 403.679 kb on + strand, within Rru_A0331at 403.679 kb on + strand, within Rru_A0331at 403.680 kb on - strand, within Rru_A0331at 403.802 kb on - strand, within Rru_A0331at 403.866 kb on + strand, within Rru_A0331at 403.866 kb on + strand, within Rru_A0331at 403.867 kb on - strand, within Rru_A0331at 403.867 kb on - strand, within Rru_A0331at 403.867 kb on - strand, within Rru_A0331at 403.867 kb on - strand, within Rru_A0331

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
remove
401,127 + Rru_A0328 0.78 +0.8
401,127 + Rru_A0328 0.78 +1.3
401,128 - Rru_A0328 0.78 +0.8
401,128 - Rru_A0328 0.78 +0.5
401,128 - Rru_A0328 0.78 +1.6
401,128 - Rru_A0328 0.78 +0.6
401,128 - Rru_A0328 0.78 -1.0
401,128 - Rru_A0328 0.78 +1.4
401,128 - Rru_A0328 0.78 +0.7
401,174 + Rru_A0328 0.85 +0.0
401,266 - +1.1
401,288 + +0.0
401,288 + +1.9
401,289 - -0.1
401,403 + +0.0
401,403 + +2.2
401,403 + +0.9
401,403 + +0.7
401,403 + +0.7
401,403 + +0.0
401,404 - +0.0
401,556 + +0.8
401,556 + +0.8
401,556 + +0.4
401,557 - +0.8
401,574 + -1.0
401,574 + +1.9
401,575 - +2.3
401,575 - -1.0
401,575 - +1.6
401,575 - +0.6
401,575 - +0.0
401,575 - +1.2
401,596 - +1.3
401,811 + Rru_A0329 0.54 +2.3
401,811 + Rru_A0329 0.54 +0.0
401,812 - Rru_A0329 0.54 -0.6
401,812 - Rru_A0329 0.54 +0.0
401,812 - Rru_A0329 0.54 +1.0
401,991 + +1.5
401,992 - -1.0
402,537 + Rru_A0330 0.48 +0.0
402,537 + Rru_A0330 0.48 +0.0
402,538 - Rru_A0330 0.48 +0.0
402,538 - Rru_A0330 0.48 +1.1
402,538 - Rru_A0330 0.48 +0.4
402,538 - Rru_A0330 0.48 +0.3
402,538 - Rru_A0330 0.48 +0.7
402,538 - Rru_A0330 0.48 -0.6
402,988 - +0.0
402,989 + +1.2
402,989 + +1.1
402,990 - -1.0
403,049 + +0.0
403,050 - +0.5
403,238 + Rru_A0331 0.12 +1.3
403,238 + Rru_A0331 0.12 +1.4
403,238 + Rru_A0331 0.12 +2.0
403,238 + Rru_A0331 0.12 +1.5
403,238 + Rru_A0331 0.12 +1.4
403,238 + Rru_A0331 0.12 +0.0
403,239 - Rru_A0331 0.12 +1.9
403,239 - Rru_A0331 0.12 +0.0
403,239 - Rru_A0331 0.12 +1.1
403,239 - Rru_A0331 0.12 +1.5
403,244 + Rru_A0331 0.13 +0.0
403,245 - Rru_A0331 0.13 +1.4
403,245 - Rru_A0331 0.13 +1.3
403,327 - Rru_A0331 0.22 +0.9
403,327 - Rru_A0331 0.22 +0.0
403,327 - Rru_A0331 0.22 +0.0
403,415 + Rru_A0331 0.31 +1.3
403,415 + Rru_A0331 0.31 +0.7
403,415 + Rru_A0331 0.31 +1.1
403,415 + Rru_A0331 0.31 +0.9
403,416 - Rru_A0331 0.31 +0.0
403,416 - Rru_A0331 0.31 +1.8
403,478 + Rru_A0331 0.37 +1.4
403,478 + Rru_A0331 0.37 +0.0
403,479 - Rru_A0331 0.37 +1.4
403,562 + Rru_A0331 0.46 +0.0
403,562 + Rru_A0331 0.46 +0.0
403,562 + Rru_A0331 0.46 +0.3
403,562 + Rru_A0331 0.46 -2.0
403,562 + Rru_A0331 0.46 +0.7
403,563 - Rru_A0331 0.46 -1.0
403,563 - Rru_A0331 0.46 +0.6
403,563 - Rru_A0331 0.46 +0.8
403,661 + Rru_A0331 0.56 +0.0
403,661 + Rru_A0331 0.56 +0.3
403,662 - Rru_A0331 0.56 +1.3
403,662 - Rru_A0331 0.56 +1.1
403,679 + Rru_A0331 0.58 +1.4
403,679 + Rru_A0331 0.58 +0.0
403,680 - Rru_A0331 0.58 +1.2
403,802 - Rru_A0331 0.71 +1.2
403,866 + Rru_A0331 0.77 +0.7
403,866 + Rru_A0331 0.77 +1.6
403,867 - Rru_A0331 0.77 +0.3
403,867 - Rru_A0331 0.77 +0.0
403,867 - Rru_A0331 0.77 +0.2
403,867 - Rru_A0331 0.77 +0.0

Or see this region's nucleotide sequence