Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0325

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0324 and Rru_A0325 are separated by 119 nucleotidesRru_A0325 and Rru_A0326 are separated by 269 nucleotides Rru_A0324: Rru_A0324 - Formate dehydrogenase, alpha subunit (NCBI), at 392,708 to 394,849 _A0324 Rru_A0325: Rru_A0325 - Molybdenum cofactor biosynthesis protein (NCBI), at 394,969 to 395,976 _A0325 Rru_A0326: Rru_A0326 - Transcriptional Regulator, NifA subfamily, Fis Family (NCBI), at 396,246 to 398,447 _A0326 Position (kb) 394 395 396Strain fitness (log2 ratio) -1 0 1 2at 394.071 kb on - strand, within Rru_A0324at 394.103 kb on + strand, within Rru_A0324at 394.103 kb on + strand, within Rru_A0324at 394.191 kb on - strand, within Rru_A0324at 394.199 kb on - strand, within Rru_A0324at 394.241 kb on + strand, within Rru_A0324at 394.242 kb on - strand, within Rru_A0324at 394.256 kb on + strand, within Rru_A0324at 394.280 kb on + strand, within Rru_A0324at 394.280 kb on + strand, within Rru_A0324at 394.281 kb on - strand, within Rru_A0324at 394.283 kb on - strand, within Rru_A0324at 394.325 kb on + strand, within Rru_A0324at 394.325 kb on + strand, within Rru_A0324at 394.326 kb on - strand, within Rru_A0324at 394.326 kb on - strand, within Rru_A0324at 394.326 kb on - strand, within Rru_A0324at 394.326 kb on - strand, within Rru_A0324at 394.421 kb on + strand, within Rru_A0324at 394.460 kb on + strand, within Rru_A0324at 394.461 kb on - strand, within Rru_A0324at 394.461 kb on - strand, within Rru_A0324at 394.523 kb on + strand, within Rru_A0324at 394.523 kb on + strand, within Rru_A0324at 394.523 kb on + strand, within Rru_A0324at 394.523 kb on + strand, within Rru_A0324at 394.524 kb on - strand, within Rru_A0324at 394.526 kb on - strand, within Rru_A0324at 394.526 kb on - strand, within Rru_A0324at 394.526 kb on - strand, within Rru_A0324at 394.655 kb on + strandat 394.655 kb on + strandat 394.655 kb on + strandat 394.655 kb on + strandat 394.656 kb on - strandat 394.656 kb on - strandat 394.656 kb on - strandat 394.664 kb on + strandat 394.664 kb on + strandat 394.664 kb on + strandat 394.664 kb on + strandat 394.665 kb on - strandat 394.665 kb on - strandat 394.736 kb on + strandat 394.737 kb on - strandat 394.737 kb on - strandat 394.742 kb on + strandat 394.742 kb on + strandat 394.743 kb on - strandat 394.743 kb on - strandat 394.743 kb on - strandat 394.743 kb on - strandat 394.743 kb on - strandat 394.743 kb on - strandat 394.743 kb on - strandat 394.808 kb on + strandat 394.808 kb on + strandat 394.808 kb on + strandat 394.808 kb on + strandat 394.809 kb on - strandat 394.809 kb on - strandat 394.809 kb on - strandat 394.809 kb on - strandat 394.809 kb on - strandat 394.809 kb on - strandat 394.847 kb on + strandat 394.956 kb on - strandat 395.017 kb on + strandat 395.017 kb on + strandat 395.017 kb on + strandat 395.017 kb on + strandat 395.017 kb on + strandat 395.017 kb on + strandat 395.017 kb on + strandat 395.017 kb on + strandat 395.018 kb on - strandat 395.018 kb on - strandat 395.062 kb on + strandat 395.680 kb on + strand, within Rru_A0325at 395.681 kb on - strand, within Rru_A0325at 395.681 kb on - strand, within Rru_A0325at 395.681 kb on - strand, within Rru_A0325at 395.770 kb on - strand, within Rru_A0325at 395.914 kb on - strandat 395.914 kb on - strandat 395.914 kb on - strandat 395.914 kb on - strandat 395.955 kb on + strandat 396.002 kb on + strandat 396.002 kb on + strandat 396.002 kb on + strandat 396.003 kb on - strandat 396.012 kb on + strandat 396.013 kb on - strandat 396.094 kb on - strandat 396.111 kb on - strandat 396.178 kb on + strandat 396.179 kb on - strandat 396.179 kb on - strandat 396.219 kb on + strandat 396.219 kb on + strandat 396.326 kb on - strandat 396.381 kb on + strandat 396.382 kb on - strandat 396.399 kb on + strandat 396.400 kb on - strandat 396.546 kb on + strand, within Rru_A0326at 396.546 kb on + strand, within Rru_A0326at 396.547 kb on - strand, within Rru_A0326at 396.603 kb on + strand, within Rru_A0326at 396.604 kb on - strand, within Rru_A0326at 396.604 kb on - strand, within Rru_A0326at 396.604 kb on - strand, within Rru_A0326at 396.604 kb on - strand, within Rru_A0326at 396.604 kb on - strand, within Rru_A0326at 396.674 kb on + strand, within Rru_A0326at 396.674 kb on + strand, within Rru_A0326at 396.674 kb on + strand, within Rru_A0326at 396.674 kb on + strand, within Rru_A0326at 396.674 kb on + strand, within Rru_A0326at 396.678 kb on + strand, within Rru_A0326at 396.678 kb on + strand, within Rru_A0326at 396.678 kb on + strand, within Rru_A0326at 396.679 kb on - strand, within Rru_A0326at 396.967 kb on - strand, within Rru_A0326

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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394,071 - Rru_A0324 0.64 +0.0
394,103 + Rru_A0324 0.65 +0.6
394,103 + Rru_A0324 0.65 +0.6
394,191 - Rru_A0324 0.69 +0.6
394,199 - Rru_A0324 0.70 +0.0
394,241 + Rru_A0324 0.72 +1.2
394,242 - Rru_A0324 0.72 +1.1
394,256 + Rru_A0324 0.72 +0.0
394,280 + Rru_A0324 0.73 +0.0
394,280 + Rru_A0324 0.73 +0.0
394,281 - Rru_A0324 0.73 +1.5
394,283 - Rru_A0324 0.74 +0.9
394,325 + Rru_A0324 0.75 +1.1
394,325 + Rru_A0324 0.75 +1.3
394,326 - Rru_A0324 0.76 +0.0
394,326 - Rru_A0324 0.76 +0.9
394,326 - Rru_A0324 0.76 +0.0
394,326 - Rru_A0324 0.76 +0.1
394,421 + Rru_A0324 0.80 +0.4
394,460 + Rru_A0324 0.82 +0.5
394,461 - Rru_A0324 0.82 +0.0
394,461 - Rru_A0324 0.82 +0.5
394,523 + Rru_A0324 0.85 +0.1
394,523 + Rru_A0324 0.85 +0.0
394,523 + Rru_A0324 0.85 +0.0
394,523 + Rru_A0324 0.85 +0.4
394,524 - Rru_A0324 0.85 +1.2
394,526 - Rru_A0324 0.85 +0.3
394,526 - Rru_A0324 0.85 +0.8
394,526 - Rru_A0324 0.85 +0.0
394,655 + +0.4
394,655 + -0.4
394,655 + +0.3
394,655 + -0.1
394,656 - +0.4
394,656 - +1.1
394,656 - +0.9
394,664 + -1.0
394,664 + +0.3
394,664 + -0.3
394,664 + +0.3
394,665 - +1.0
394,665 - +0.0
394,736 + +0.5
394,737 - +0.0
394,737 - +1.1
394,742 + -0.3
394,742 + +0.3
394,743 - +0.0
394,743 - +1.5
394,743 - +1.1
394,743 - -1.0
394,743 - +1.0
394,743 - +1.1
394,743 - +0.8
394,808 + +0.8
394,808 + +0.0
394,808 + +1.6
394,808 + +0.4
394,809 - +0.0
394,809 - +0.9
394,809 - +0.0
394,809 - +0.0
394,809 - +0.2
394,809 - +0.8
394,847 + +0.1
394,956 - -1.0
395,017 + +0.0
395,017 + -1.0
395,017 + +0.0
395,017 + +1.1
395,017 + +0.9
395,017 + +0.4
395,017 + +0.0
395,017 + +1.0
395,018 - +0.0
395,018 - +1.2
395,062 + -1.6
395,680 + Rru_A0325 0.71 -1.0
395,681 - Rru_A0325 0.71 +1.7
395,681 - Rru_A0325 0.71 +1.2
395,681 - Rru_A0325 0.71 +0.8
395,770 - Rru_A0325 0.79 +0.0
395,914 - +0.6
395,914 - -1.0
395,914 - +2.0
395,914 - +1.2
395,955 + +0.0
396,002 + +1.4
396,002 + +1.0
396,002 + -0.6
396,003 - +0.0
396,012 + +0.6
396,013 - +1.2
396,094 - +0.6
396,111 - +1.0
396,178 + +0.0
396,179 - +0.8
396,179 - -1.0
396,219 + +0.7
396,219 + +0.0
396,326 - +0.0
396,381 + +0.0
396,382 - +0.9
396,399 + +0.3
396,400 - +0.9
396,546 + Rru_A0326 0.14 +0.0
396,546 + Rru_A0326 0.14 +1.3
396,547 - Rru_A0326 0.14 +0.0
396,603 + Rru_A0326 0.16 +1.2
396,604 - Rru_A0326 0.16 +0.0
396,604 - Rru_A0326 0.16 -1.0
396,604 - Rru_A0326 0.16 +1.3
396,604 - Rru_A0326 0.16 +1.0
396,604 - Rru_A0326 0.16 +1.6
396,674 + Rru_A0326 0.19 +0.0
396,674 + Rru_A0326 0.19 +0.0
396,674 + Rru_A0326 0.19 +1.3
396,674 + Rru_A0326 0.19 +0.8
396,674 + Rru_A0326 0.19 +0.0
396,678 + Rru_A0326 0.20 +0.9
396,678 + Rru_A0326 0.20 +0.9
396,678 + Rru_A0326 0.20 +0.7
396,679 - Rru_A0326 0.20 +0.7
396,967 - Rru_A0326 0.33 +0.9

Or see this region's nucleotide sequence