Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0323

Experiment: Succinic Acid; Light intensity 9 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0321 and Rru_A0322 are separated by 9 nucleotidesRru_A0322 and Rru_A0323 are separated by 37 nucleotidesRru_A0323 and Rru_A0324 are separated by 39 nucleotides Rru_A0321: Rru_A0321 - NADH dehydrogenase (ubiquinone), 20 kDa subunit (NCBI), at 391,105 to 391,626 _A0321 Rru_A0322: Rru_A0322 - Peptidase M52, hydrogen uptake protein (NCBI), at 391,636 to 392,100 _A0322 Rru_A0323: Rru_A0323 - 4Fe-4S ferredoxin, iron-sulfur binding (NCBI), at 392,138 to 392,668 _A0323 Rru_A0324: Rru_A0324 - Formate dehydrogenase, alpha subunit (NCBI), at 392,708 to 394,849 _A0324 Position (kb) 392 393Strain fitness (log2 ratio) -1 0 1 2at 391.222 kb on + strand, within Rru_A0321at 391.223 kb on - strand, within Rru_A0321at 391.223 kb on - strand, within Rru_A0321at 391.225 kb on + strand, within Rru_A0321at 391.225 kb on + strand, within Rru_A0321at 391.226 kb on - strand, within Rru_A0321at 391.226 kb on - strand, within Rru_A0321at 391.336 kb on + strand, within Rru_A0321at 391.337 kb on - strand, within Rru_A0321at 391.414 kb on + strand, within Rru_A0321at 391.414 kb on + strand, within Rru_A0321at 391.415 kb on - strand, within Rru_A0321at 391.415 kb on - strand, within Rru_A0321at 391.415 kb on - strand, within Rru_A0321at 391.459 kb on + strand, within Rru_A0321at 391.459 kb on + strand, within Rru_A0321at 391.459 kb on + strand, within Rru_A0321at 391.460 kb on - strand, within Rru_A0321at 391.460 kb on - strand, within Rru_A0321at 391.460 kb on - strand, within Rru_A0321at 391.460 kb on - strand, within Rru_A0321at 391.460 kb on - strand, within Rru_A0321at 391.547 kb on - strand, within Rru_A0321at 391.547 kb on - strand, within Rru_A0321at 391.547 kb on - strand, within Rru_A0321at 391.791 kb on - strand, within Rru_A0322at 391.791 kb on - strand, within Rru_A0322at 391.801 kb on + strand, within Rru_A0322at 391.802 kb on - strand, within Rru_A0322at 391.802 kb on - strand, within Rru_A0322at 391.802 kb on - strand, within Rru_A0322at 391.960 kb on + strand, within Rru_A0322at 391.961 kb on - strand, within Rru_A0322at 391.961 kb on - strand, within Rru_A0322at 392.078 kb on + strandat 392.078 kb on + strandat 392.079 kb on - strandat 392.079 kb on - strandat 392.079 kb on - strandat 392.370 kb on - strand, within Rru_A0323at 392.512 kb on + strand, within Rru_A0323at 392.513 kb on - strand, within Rru_A0323at 392.555 kb on - strand, within Rru_A0323at 392.700 kb on + strandat 392.700 kb on + strandat 392.735 kb on + strandat 392.837 kb on - strandat 392.844 kb on - strandat 392.995 kb on + strand, within Rru_A0324at 392.995 kb on + strand, within Rru_A0324at 392.995 kb on + strand, within Rru_A0324at 392.995 kb on + strand, within Rru_A0324at 392.996 kb on - strand, within Rru_A0324at 392.996 kb on - strand, within Rru_A0324at 392.999 kb on + strand, within Rru_A0324at 392.999 kb on + strand, within Rru_A0324at 393.000 kb on - strand, within Rru_A0324at 393.000 kb on - strand, within Rru_A0324at 393.059 kb on + strand, within Rru_A0324at 393.059 kb on + strand, within Rru_A0324at 393.060 kb on - strand, within Rru_A0324at 393.230 kb on + strand, within Rru_A0324at 393.231 kb on - strand, within Rru_A0324at 393.232 kb on + strand, within Rru_A0324at 393.233 kb on - strand, within Rru_A0324at 393.450 kb on - strand, within Rru_A0324at 393.450 kb on - strand, within Rru_A0324at 393.450 kb on - strand, within Rru_A0324at 393.471 kb on - strand, within Rru_A0324at 393.471 kb on - strand, within Rru_A0324at 393.471 kb on - strand, within Rru_A0324at 393.491 kb on + strand, within Rru_A0324at 393.492 kb on - strand, within Rru_A0324at 393.503 kb on + strand, within Rru_A0324at 393.561 kb on - strand, within Rru_A0324at 393.561 kb on - strand, within Rru_A0324

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
remove
391,222 + Rru_A0321 0.22 +0.0
391,223 - Rru_A0321 0.23 +2.2
391,223 - Rru_A0321 0.23 +1.0
391,225 + Rru_A0321 0.23 +0.8
391,225 + Rru_A0321 0.23 +0.0
391,226 - Rru_A0321 0.23 +1.1
391,226 - Rru_A0321 0.23 +0.0
391,336 + Rru_A0321 0.44 +0.8
391,337 - Rru_A0321 0.44 -1.0
391,414 + Rru_A0321 0.59 +0.0
391,414 + Rru_A0321 0.59 -0.2
391,415 - Rru_A0321 0.59 -0.0
391,415 - Rru_A0321 0.59 +1.4
391,415 - Rru_A0321 0.59 +0.0
391,459 + Rru_A0321 0.68 +0.3
391,459 + Rru_A0321 0.68 +0.0
391,459 + Rru_A0321 0.68 +0.0
391,460 - Rru_A0321 0.68 +0.0
391,460 - Rru_A0321 0.68 +1.1
391,460 - Rru_A0321 0.68 +0.0
391,460 - Rru_A0321 0.68 +2.4
391,460 - Rru_A0321 0.68 +0.8
391,547 - Rru_A0321 0.85 +0.0
391,547 - Rru_A0321 0.85 +0.9
391,547 - Rru_A0321 0.85 +0.0
391,791 - Rru_A0322 0.33 +0.0
391,791 - Rru_A0322 0.33 +0.8
391,801 + Rru_A0322 0.35 +1.3
391,802 - Rru_A0322 0.36 +0.3
391,802 - Rru_A0322 0.36 +1.5
391,802 - Rru_A0322 0.36 +1.2
391,960 + Rru_A0322 0.70 +0.0
391,961 - Rru_A0322 0.70 +1.6
391,961 - Rru_A0322 0.70 +0.0
392,078 + +0.0
392,078 + +2.6
392,079 - +1.6
392,079 - +0.0
392,079 - +0.7
392,370 - Rru_A0323 0.44 +1.3
392,512 + Rru_A0323 0.70 -0.3
392,513 - Rru_A0323 0.71 -1.0
392,555 - Rru_A0323 0.79 +1.2
392,700 + +0.4
392,700 + +0.0
392,735 + +0.0
392,837 - +1.5
392,844 - +1.0
392,995 + Rru_A0324 0.13 +1.8
392,995 + Rru_A0324 0.13 +0.0
392,995 + Rru_A0324 0.13 +0.0
392,995 + Rru_A0324 0.13 +0.8
392,996 - Rru_A0324 0.13 +0.8
392,996 - Rru_A0324 0.13 +0.5
392,999 + Rru_A0324 0.14 +0.5
392,999 + Rru_A0324 0.14 +1.0
393,000 - Rru_A0324 0.14 +1.0
393,000 - Rru_A0324 0.14 +0.7
393,059 + Rru_A0324 0.16 +0.8
393,059 + Rru_A0324 0.16 +1.0
393,060 - Rru_A0324 0.16 +1.7
393,230 + Rru_A0324 0.24 +1.3
393,231 - Rru_A0324 0.24 +0.6
393,232 + Rru_A0324 0.24 +0.0
393,233 - Rru_A0324 0.25 +0.8
393,450 - Rru_A0324 0.35 +0.0
393,450 - Rru_A0324 0.35 +0.2
393,450 - Rru_A0324 0.35 +0.9
393,471 - Rru_A0324 0.36 +1.3
393,471 - Rru_A0324 0.36 +0.5
393,471 - Rru_A0324 0.36 +2.3
393,491 + Rru_A0324 0.37 +0.5
393,492 - Rru_A0324 0.37 +0.8
393,503 + Rru_A0324 0.37 +0.0
393,561 - Rru_A0324 0.40 -1.0
393,561 - Rru_A0324 0.40 +0.4

Or see this region's nucleotide sequence