Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0306 and Rru_A0307 overlap by 4 nucleotides Rru_A0307 and Rru_A0308 are separated by 0 nucleotides Rru_A0308 and Rru_A0309 are separated by 492 nucleotides
Rru_A0306: Rru_A0306 - Hydrogenase formation HypD protein (NCBI), at 373,037 to 374,197
_A0306
Rru_A0307: Rru_A0307 - Hydrogenase expression/formation protein (HUPF/HYPC) (NCBI), at 374,194 to 374,424
_A0307
Rru_A0308: Rru_A0308 - Hydrogenase maturation protein HypF (NCBI), at 374,425 to 376,731
_A0308
Rru_A0309: Rru_A0309 - 4Fe-4S ferredoxin, iron-sulfur binding (NCBI), at 377,224 to 377,862
_A0309
Position (kb) 374
375
376
377 Strain fitness (log2 ratio) -1
0
1
2 at 373.917 kb on + strand, within Rru_A0306 at 373.917 kb on + strand, within Rru_A0306 at 373.917 kb on + strand, within Rru_A0306 at 373.918 kb on - strand, within Rru_A0306 at 373.918 kb on - strand, within Rru_A0306 at 373.918 kb on - strand, within Rru_A0306 at 373.918 kb on - strand, within Rru_A0306 at 374.326 kb on + strand, within Rru_A0307 at 374.326 kb on + strand, within Rru_A0307 at 374.326 kb on + strand, within Rru_A0307 at 374.327 kb on - strand, within Rru_A0307 at 374.327 kb on - strand, within Rru_A0307 at 374.426 kb on + strand at 374.426 kb on + strand at 374.426 kb on + strand at 374.426 kb on + strand at 374.427 kb on - strand at 374.427 kb on - strand at 374.427 kb on - strand at 374.427 kb on - strand at 374.456 kb on - strand at 374.468 kb on + strand at 374.469 kb on - strand at 374.556 kb on + strand at 374.557 kb on - strand at 374.829 kb on - strand, within Rru_A0308 at 374.924 kb on - strand, within Rru_A0308 at 375.186 kb on + strand, within Rru_A0308 at 375.397 kb on - strand, within Rru_A0308 at 375.919 kb on + strand, within Rru_A0308 at 375.919 kb on + strand, within Rru_A0308 at 375.919 kb on + strand, within Rru_A0308 at 375.919 kb on + strand, within Rru_A0308 at 375.920 kb on - strand, within Rru_A0308 at 376.101 kb on + strand, within Rru_A0308 at 376.188 kb on - strand, within Rru_A0308 at 376.708 kb on + strand at 376.821 kb on + strand at 376.821 kb on + strand at 376.822 kb on - strand at 376.822 kb on - strand at 376.863 kb on - strand at 377.084 kb on - strand at 377.202 kb on + strand at 377.203 kb on - strand at 377.203 kb on - strand at 377.644 kb on + strand, within Rru_A0309 at 377.644 kb on + strand, within Rru_A0309 at 377.645 kb on - strand, within Rru_A0309 at 377.645 kb on - strand, within Rru_A0309 at 377.645 kb on - strand, within Rru_A0309 at 377.647 kb on - strand, within Rru_A0309 at 377.647 kb on - strand, within Rru_A0309 at 377.693 kb on - strand, within Rru_A0309 at 377.693 kb on - strand, within Rru_A0309
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 373,917 + Rru_A0306 0.76 +0.0 373,917 + Rru_A0306 0.76 +0.8 373,917 + Rru_A0306 0.76 +2.6 373,918 - Rru_A0306 0.76 +1.4 373,918 - Rru_A0306 0.76 +0.1 373,918 - Rru_A0306 0.76 +0.0 373,918 - Rru_A0306 0.76 +0.9 374,326 + Rru_A0307 0.57 +1.4 374,326 + Rru_A0307 0.57 +1.4 374,326 + Rru_A0307 0.57 +1.9 374,327 - Rru_A0307 0.58 -1.0 374,327 - Rru_A0307 0.58 +0.6 374,426 + +0.0 374,426 + +0.0 374,426 + +0.9 374,426 + +1.3 374,427 - +0.0 374,427 - +1.8 374,427 - +0.0 374,427 - +0.0 374,456 - +0.9 374,468 + +0.0 374,469 - +0.0 374,556 + +1.3 374,557 - +0.0 374,829 - Rru_A0308 0.18 +0.7 374,924 - Rru_A0308 0.22 +1.5 375,186 + Rru_A0308 0.33 +2.3 375,397 - Rru_A0308 0.42 +1.5 375,919 + Rru_A0308 0.65 +0.0 375,919 + Rru_A0308 0.65 +0.0 375,919 + Rru_A0308 0.65 +0.0 375,919 + Rru_A0308 0.65 +1.3 375,920 - Rru_A0308 0.65 +1.7 376,101 + Rru_A0308 0.73 +0.0 376,188 - Rru_A0308 0.76 +0.0 376,708 + +1.0 376,821 + +0.0 376,821 + -0.6 376,822 - +0.0 376,822 - +0.0 376,863 - +1.4 377,084 - +0.0 377,202 + +0.0 377,203 - +0.0 377,203 - -1.0 377,644 + Rru_A0309 0.66 +0.0 377,644 + Rru_A0309 0.66 +0.0 377,645 - Rru_A0309 0.66 +0.0 377,645 - Rru_A0309 0.66 +0.0 377,645 - Rru_A0309 0.66 +1.5 377,647 - Rru_A0309 0.66 +0.8 377,647 - Rru_A0309 0.66 +0.0 377,693 - Rru_A0309 0.73 +0.0 377,693 - Rru_A0309 0.73 +0.9
Or see this region's nucleotide sequence