Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0281

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0280 and Rru_A0281 overlap by 4 nucleotidesRru_A0281 and Rru_A0282 are separated by 172 nucleotides Rru_A0280: Rru_A0280 - Queuine tRNA-ribosyltransferase (NCBI), at 344,596 to 345,723 _A0280 Rru_A0281: Rru_A0281 - Queuosine biosynthesis protein (NCBI), at 345,720 to 346,757 _A0281 Rru_A0282: Rru_A0282 - Protein of unknown function DUF204 (NCBI), at 346,930 to 347,511 _A0282 Position (kb) 345 346 347Strain fitness (log2 ratio) -1 0 1 2at 344.777 kb on + strand, within Rru_A0280at 344.777 kb on + strand, within Rru_A0280at 344.777 kb on + strand, within Rru_A0280at 344.777 kb on + strand, within Rru_A0280at 344.778 kb on - strand, within Rru_A0280at 344.778 kb on - strand, within Rru_A0280at 344.778 kb on - strand, within Rru_A0280at 344.778 kb on - strand, within Rru_A0280at 344.778 kb on - strand, within Rru_A0280at 344.778 kb on - strand, within Rru_A0280at 344.793 kb on + strand, within Rru_A0280at 344.793 kb on + strand, within Rru_A0280at 344.793 kb on + strand, within Rru_A0280at 344.793 kb on + strand, within Rru_A0280at 344.794 kb on - strand, within Rru_A0280at 344.794 kb on - strand, within Rru_A0280at 344.794 kb on - strand, within Rru_A0280at 344.993 kb on + strand, within Rru_A0280at 344.993 kb on + strand, within Rru_A0280at 344.994 kb on - strand, within Rru_A0280at 345.089 kb on + strand, within Rru_A0280at 345.089 kb on + strand, within Rru_A0280at 345.179 kb on + strand, within Rru_A0280at 345.352 kb on + strand, within Rru_A0280at 345.352 kb on + strand, within Rru_A0280at 345.352 kb on + strand, within Rru_A0280at 345.352 kb on + strand, within Rru_A0280at 345.352 kb on + strand, within Rru_A0280at 345.353 kb on - strand, within Rru_A0280at 345.353 kb on - strand, within Rru_A0280at 345.353 kb on - strand, within Rru_A0280at 345.437 kb on + strand, within Rru_A0280at 345.437 kb on + strand, within Rru_A0280at 345.539 kb on + strand, within Rru_A0280at 345.539 kb on + strand, within Rru_A0280at 345.539 kb on + strand, within Rru_A0280at 345.539 kb on + strand, within Rru_A0280at 345.539 kb on + strand, within Rru_A0280at 345.540 kb on - strand, within Rru_A0280at 345.540 kb on - strand, within Rru_A0280at 345.540 kb on - strand, within Rru_A0280at 345.540 kb on - strand, within Rru_A0280at 345.540 kb on - strand, within Rru_A0280at 345.540 kb on - strand, within Rru_A0280at 345.540 kb on - strand, within Rru_A0280at 345.540 kb on - strand, within Rru_A0280at 345.543 kb on + strand, within Rru_A0280at 345.543 kb on + strand, within Rru_A0280at 345.544 kb on - strand, within Rru_A0280at 345.544 kb on - strand, within Rru_A0280at 345.769 kb on + strandat 345.769 kb on + strandat 345.769 kb on + strandat 345.769 kb on + strandat 345.770 kb on - strandat 345.770 kb on - strandat 345.789 kb on + strandat 345.789 kb on + strandat 345.802 kb on + strandat 345.803 kb on - strandat 346.109 kb on + strand, within Rru_A0281at 346.218 kb on + strand, within Rru_A0281at 346.218 kb on + strand, within Rru_A0281at 346.218 kb on + strand, within Rru_A0281at 346.218 kb on + strand, within Rru_A0281at 346.219 kb on - strand, within Rru_A0281at 346.219 kb on - strand, within Rru_A0281at 346.219 kb on - strand, within Rru_A0281at 346.262 kb on - strand, within Rru_A0281at 346.310 kb on + strand, within Rru_A0281at 346.312 kb on + strand, within Rru_A0281at 346.312 kb on + strand, within Rru_A0281at 346.313 kb on - strand, within Rru_A0281at 346.313 kb on - strand, within Rru_A0281at 346.329 kb on - strand, within Rru_A0281at 346.329 kb on - strand, within Rru_A0281at 346.329 kb on - strand, within Rru_A0281at 346.336 kb on + strand, within Rru_A0281at 346.337 kb on - strand, within Rru_A0281at 346.337 kb on - strand, within Rru_A0281at 346.601 kb on + strand, within Rru_A0281at 346.867 kb on - strandat 347.100 kb on + strand, within Rru_A0282at 347.100 kb on + strand, within Rru_A0282at 347.100 kb on + strand, within Rru_A0282at 347.387 kb on + strand, within Rru_A0282at 347.387 kb on + strand, within Rru_A0282at 347.535 kb on + strandat 347.536 kb on - strandat 347.716 kb on + strandat 347.716 kb on + strandat 347.718 kb on + strandat 347.718 kb on + strandat 347.718 kb on + strandat 347.718 kb on + strandat 347.718 kb on + strandat 347.718 kb on + strandat 347.718 kb on + strandat 347.718 kb on + strandat 347.718 kb on + strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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344,777 + Rru_A0280 0.16 -1.0
344,777 + Rru_A0280 0.16 +0.0
344,777 + Rru_A0280 0.16 +0.0
344,777 + Rru_A0280 0.16 +1.1
344,778 - Rru_A0280 0.16 +0.0
344,778 - Rru_A0280 0.16 +0.0
344,778 - Rru_A0280 0.16 +0.0
344,778 - Rru_A0280 0.16 +0.8
344,778 - Rru_A0280 0.16 +0.0
344,778 - Rru_A0280 0.16 -1.0
344,793 + Rru_A0280 0.17 +2.6
344,793 + Rru_A0280 0.17 +1.1
344,793 + Rru_A0280 0.17 +0.0
344,793 + Rru_A0280 0.17 +0.2
344,794 - Rru_A0280 0.18 +0.0
344,794 - Rru_A0280 0.18 +2.0
344,794 - Rru_A0280 0.18 +2.7
344,993 + Rru_A0280 0.35 +1.3
344,993 + Rru_A0280 0.35 +0.5
344,994 - Rru_A0280 0.35 +0.5
345,089 + Rru_A0280 0.44 +0.0
345,089 + Rru_A0280 0.44 +0.0
345,179 + Rru_A0280 0.52 +0.0
345,352 + Rru_A0280 0.67 +0.0
345,352 + Rru_A0280 0.67 +1.3
345,352 + Rru_A0280 0.67 +0.6
345,352 + Rru_A0280 0.67 +1.6
345,352 + Rru_A0280 0.67 +0.7
345,353 - Rru_A0280 0.67 +0.0
345,353 - Rru_A0280 0.67 +0.0
345,353 - Rru_A0280 0.67 +0.0
345,437 + Rru_A0280 0.75 +0.0
345,437 + Rru_A0280 0.75 -1.0
345,539 + Rru_A0280 0.84 +0.0
345,539 + Rru_A0280 0.84 +2.0
345,539 + Rru_A0280 0.84 +0.0
345,539 + Rru_A0280 0.84 +0.0
345,539 + Rru_A0280 0.84 +1.6
345,540 - Rru_A0280 0.84 +0.0
345,540 - Rru_A0280 0.84 -1.0
345,540 - Rru_A0280 0.84 +0.0
345,540 - Rru_A0280 0.84 +0.0
345,540 - Rru_A0280 0.84 +0.0
345,540 - Rru_A0280 0.84 +0.0
345,540 - Rru_A0280 0.84 +1.6
345,540 - Rru_A0280 0.84 -0.3
345,543 + Rru_A0280 0.84 +1.4
345,543 + Rru_A0280 0.84 +2.0
345,544 - Rru_A0280 0.84 +0.4
345,544 - Rru_A0280 0.84 +0.0
345,769 + +0.0
345,769 + +1.8
345,769 + +0.7
345,769 + +0.3
345,770 - +1.3
345,770 - +0.4
345,789 + +0.8
345,789 + +1.7
345,802 + +1.3
345,803 - +0.0
346,109 + Rru_A0281 0.37 +0.0
346,218 + Rru_A0281 0.48 +0.5
346,218 + Rru_A0281 0.48 +0.0
346,218 + Rru_A0281 0.48 +1.1
346,218 + Rru_A0281 0.48 +0.0
346,219 - Rru_A0281 0.48 +0.0
346,219 - Rru_A0281 0.48 -0.3
346,219 - Rru_A0281 0.48 +1.2
346,262 - Rru_A0281 0.52 +0.0
346,310 + Rru_A0281 0.57 +0.8
346,312 + Rru_A0281 0.57 +0.0
346,312 + Rru_A0281 0.57 +1.1
346,313 - Rru_A0281 0.57 +0.4
346,313 - Rru_A0281 0.57 +1.6
346,329 - Rru_A0281 0.59 +0.0
346,329 - Rru_A0281 0.59 +0.0
346,329 - Rru_A0281 0.59 +0.0
346,336 + Rru_A0281 0.59 +1.9
346,337 - Rru_A0281 0.59 +0.0
346,337 - Rru_A0281 0.59 +0.0
346,601 + Rru_A0281 0.85 -0.1
346,867 - +0.3
347,100 + Rru_A0282 0.29 -1.0
347,100 + Rru_A0282 0.29 -0.2
347,100 + Rru_A0282 0.29 +0.5
347,387 + Rru_A0282 0.79 +0.9
347,387 + Rru_A0282 0.79 +1.0
347,535 + +0.0
347,536 - +0.0
347,716 + +0.6
347,716 + +0.0
347,718 + +1.2
347,718 + +0.9
347,718 + -1.5
347,718 + -1.0
347,718 + +1.5
347,718 + +0.0
347,718 + +0.0
347,718 + +0.8
347,718 + +0.7
347,719 - +1.1
347,719 - +1.7
347,719 - +0.9
347,719 - +0.6
347,719 - +1.4
347,719 - +1.1
347,719 - +0.0
347,719 - +1.5
347,719 - +0.0
347,719 - +0.0
347,719 - +1.0
347,719 - +0.7

Or see this region's nucleotide sequence