Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0276 and Rru_A0277 are separated by 174 nucleotides Rru_A0277 and Rru_A0278 are separated by 296 nucleotides Rru_A0278 and Rru_A0279 are separated by 52 nucleotides
Rru_A0276: Rru_A0276 - Polyhydroxyalkanoate synthesis repressor PhaR (NCBI), at 341,285 to 341,890
_A0276
Rru_A0277: Rru_A0277 - hypothetical protein (NCBI), at 342,065 to 342,571
_A0277
Rru_A0278: Rru_A0278 - Transcriptional Regulator, XRE family (NCBI), at 342,868 to 343,305
_A0278
Rru_A0279: Rru_A0279 - 4Fe-4S ferredoxin, iron-sulfur binding (NCBI), at 343,358 to 344,485
_A0279
Position (kb) 342
343 Strain fitness (log2 ratio) -1
0
1
2 at 341.113 kb on + strand at 341.119 kb on - strand at 341.195 kb on + strand at 341.195 kb on + strand at 341.195 kb on + strand at 341.195 kb on + strand at 341.201 kb on + strand at 341.201 kb on + strand at 341.201 kb on + strand at 341.237 kb on + strand at 341.948 kb on - strand at 341.950 kb on + strand at 341.951 kb on - strand at 341.951 kb on - strand at 341.951 kb on - strand at 341.958 kb on + strand at 341.959 kb on - strand at 341.961 kb on - strand at 342.467 kb on + strand, within Rru_A0277 at 342.467 kb on + strand, within Rru_A0277 at 342.467 kb on + strand, within Rru_A0277 at 342.468 kb on - strand, within Rru_A0277 at 342.468 kb on - strand, within Rru_A0277 at 342.468 kb on - strand, within Rru_A0277 at 342.525 kb on + strand at 342.525 kb on + strand at 342.525 kb on + strand at 342.525 kb on + strand at 342.526 kb on - strand at 342.684 kb on - strand at 342.867 kb on + strand at 342.867 kb on + strand at 342.868 kb on - strand at 343.011 kb on + strand, within Rru_A0278 at 343.012 kb on - strand, within Rru_A0278 at 343.029 kb on + strand, within Rru_A0278 at 343.029 kb on + strand, within Rru_A0278 at 343.029 kb on + strand, within Rru_A0278 at 343.029 kb on + strand, within Rru_A0278 at 343.030 kb on - strand, within Rru_A0278 at 343.030 kb on - strand, within Rru_A0278 at 343.033 kb on + strand, within Rru_A0278 at 343.034 kb on - strand, within Rru_A0278 at 343.108 kb on + strand, within Rru_A0278 at 343.108 kb on + strand, within Rru_A0278 at 343.359 kb on + strand at 343.359 kb on + strand at 343.360 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 341,113 + +1.4 341,119 - +0.7 341,195 + +0.0 341,195 + +0.0 341,195 + +2.1 341,195 + +2.2 341,201 + +0.0 341,201 + +1.8 341,201 + +1.7 341,237 + +0.0 341,948 - +1.2 341,950 + +2.1 341,951 - +0.8 341,951 - +0.5 341,951 - +0.0 341,958 + +1.2 341,959 - -1.6 341,961 - -1.0 342,467 + Rru_A0277 0.79 +1.6 342,467 + Rru_A0277 0.79 +0.0 342,467 + Rru_A0277 0.79 +1.6 342,468 - Rru_A0277 0.79 +1.5 342,468 - Rru_A0277 0.79 +0.0 342,468 - Rru_A0277 0.79 +0.9 342,525 + +0.0 342,525 + +0.0 342,525 + +0.0 342,525 + +1.5 342,526 - +0.7 342,684 - +0.3 342,867 + +0.0 342,867 + +0.0 342,868 - +0.0 343,011 + Rru_A0278 0.33 +1.7 343,012 - Rru_A0278 0.33 +0.2 343,029 + Rru_A0278 0.37 +0.0 343,029 + Rru_A0278 0.37 +0.1 343,029 + Rru_A0278 0.37 +0.0 343,029 + Rru_A0278 0.37 +1.3 343,030 - Rru_A0278 0.37 -1.6 343,030 - Rru_A0278 0.37 +0.0 343,033 + Rru_A0278 0.38 +1.3 343,034 - Rru_A0278 0.38 +0.2 343,108 + Rru_A0278 0.55 -1.6 343,108 + Rru_A0278 0.55 +0.0 343,359 + +1.1 343,359 + +1.8 343,360 - +0.1
Or see this region's nucleotide sequence