Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0267 and Rru_A0268 are separated by 39 nucleotides Rru_A0268 and Rru_A0269 are separated by 305 nucleotides
Rru_A0267: Rru_A0267 - Lytic transglycosylase, catalytic (NCBI), at 331,970 to 333,694
_A0267
Rru_A0268: Rru_A0268 - Molybdopterin binding domain (NCBI), at 333,734 to 334,282
_A0268
Rru_A0269: Rru_A0269 - hypothetical protein (NCBI), at 334,588 to 335,469
_A0269
Position (kb) 333
334
335 Strain fitness (log2 ratio) -1
0
1
2 at 332.867 kb on + strand, within Rru_A0267 at 332.868 kb on - strand, within Rru_A0267 at 332.868 kb on - strand, within Rru_A0267 at 333.041 kb on + strand, within Rru_A0267 at 333.218 kb on + strand, within Rru_A0267 at 333.218 kb on + strand, within Rru_A0267 at 333.219 kb on - strand, within Rru_A0267 at 333.219 kb on - strand, within Rru_A0267 at 333.219 kb on - strand, within Rru_A0267 at 333.219 kb on - strand, within Rru_A0267 at 333.401 kb on + strand, within Rru_A0267 at 333.401 kb on + strand, within Rru_A0267 at 333.401 kb on + strand, within Rru_A0267 at 333.401 kb on + strand, within Rru_A0267 at 333.402 kb on - strand, within Rru_A0267 at 333.402 kb on - strand, within Rru_A0267 at 333.464 kb on + strand, within Rru_A0267 at 333.464 kb on + strand, within Rru_A0267 at 333.464 kb on + strand, within Rru_A0267 at 333.464 kb on + strand, within Rru_A0267 at 333.465 kb on - strand, within Rru_A0267 at 333.465 kb on - strand, within Rru_A0267 at 333.465 kb on - strand, within Rru_A0267 at 333.466 kb on + strand, within Rru_A0267 at 333.466 kb on + strand, within Rru_A0267 at 333.466 kb on + strand, within Rru_A0267 at 333.512 kb on + strand, within Rru_A0267 at 333.593 kb on + strand at 333.593 kb on + strand at 333.593 kb on + strand at 333.594 kb on - strand at 333.719 kb on + strand at 333.719 kb on + strand at 333.719 kb on + strand at 333.720 kb on - strand at 333.720 kb on - strand at 334.022 kb on + strand, within Rru_A0268 at 334.023 kb on - strand, within Rru_A0268 at 334.023 kb on - strand, within Rru_A0268 at 334.133 kb on + strand, within Rru_A0268 at 334.133 kb on + strand, within Rru_A0268 at 334.133 kb on + strand, within Rru_A0268 at 334.133 kb on + strand, within Rru_A0268 at 334.133 kb on + strand, within Rru_A0268 at 334.133 kb on + strand, within Rru_A0268 at 334.133 kb on + strand, within Rru_A0268 at 334.133 kb on + strand, within Rru_A0268 at 334.133 kb on + strand, within Rru_A0268 at 334.133 kb on + strand, within Rru_A0268 at 334.134 kb on - strand, within Rru_A0268 at 334.134 kb on - strand, within Rru_A0268 at 334.134 kb on - strand, within Rru_A0268 at 334.134 kb on - strand, within Rru_A0268 at 334.134 kb on - strand, within Rru_A0268 at 334.134 kb on - strand, within Rru_A0268 at 334.261 kb on + strand at 334.261 kb on + strand at 334.262 kb on - strand at 334.262 kb on - strand at 334.280 kb on + strand at 334.281 kb on - strand at 334.281 kb on - strand at 334.281 kb on - strand at 334.319 kb on + strand at 334.320 kb on - strand at 334.320 kb on - strand at 334.555 kb on - strand at 334.641 kb on + strand at 334.651 kb on + strand at 334.651 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 332,867 + Rru_A0267 0.52 +1.3 332,868 - Rru_A0267 0.52 +0.9 332,868 - Rru_A0267 0.52 +0.0 333,041 + Rru_A0267 0.62 -1.0 333,218 + Rru_A0267 0.72 +1.0 333,218 + Rru_A0267 0.72 +0.7 333,219 - Rru_A0267 0.72 +1.3 333,219 - Rru_A0267 0.72 +1.4 333,219 - Rru_A0267 0.72 +0.0 333,219 - Rru_A0267 0.72 +0.0 333,401 + Rru_A0267 0.83 +1.7 333,401 + Rru_A0267 0.83 +0.0 333,401 + Rru_A0267 0.83 +1.8 333,401 + Rru_A0267 0.83 +0.0 333,402 - Rru_A0267 0.83 +1.0 333,402 - Rru_A0267 0.83 +0.0 333,464 + Rru_A0267 0.87 +0.8 333,464 + Rru_A0267 0.87 +1.7 333,464 + Rru_A0267 0.87 +0.0 333,464 + Rru_A0267 0.87 +0.0 333,465 - Rru_A0267 0.87 +0.0 333,465 - Rru_A0267 0.87 +0.4 333,465 - Rru_A0267 0.87 +1.4 333,466 + Rru_A0267 0.87 +0.0 333,466 + Rru_A0267 0.87 +1.7 333,466 + Rru_A0267 0.87 +0.0 333,512 + Rru_A0267 0.89 +1.0 333,593 + +0.0 333,593 + +1.0 333,593 + +1.0 333,594 - +0.7 333,719 + +0.0 333,719 + +0.0 333,719 + -1.0 333,720 - +0.0 333,720 - -1.0 334,022 + Rru_A0268 0.52 +0.0 334,023 - Rru_A0268 0.53 +0.0 334,023 - Rru_A0268 0.53 +0.2 334,133 + Rru_A0268 0.73 +0.9 334,133 + Rru_A0268 0.73 +0.0 334,133 + Rru_A0268 0.73 +0.0 334,133 + Rru_A0268 0.73 +0.4 334,133 + Rru_A0268 0.73 +0.7 334,133 + Rru_A0268 0.73 +1.2 334,133 + Rru_A0268 0.73 +1.1 334,133 + Rru_A0268 0.73 +0.0 334,133 + Rru_A0268 0.73 +1.4 334,133 + Rru_A0268 0.73 +0.5 334,134 - Rru_A0268 0.73 +0.0 334,134 - Rru_A0268 0.73 +0.5 334,134 - Rru_A0268 0.73 +1.3 334,134 - Rru_A0268 0.73 +0.0 334,134 - Rru_A0268 0.73 +1.1 334,134 - Rru_A0268 0.73 +0.8 334,261 + +0.2 334,261 + +1.2 334,262 - +0.0 334,262 - -1.6 334,280 + +1.3 334,281 - +0.0 334,281 - +1.3 334,281 - +1.3 334,319 + +0.0 334,320 - +0.0 334,320 - +0.7 334,555 - +0.0 334,641 + -1.0 334,651 + +0.0 334,651 + +0.0
Or see this region's nucleotide sequence