Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0203 and Rru_A0204 are separated by 249 nucleotides Rru_A0204 and Rru_A0205 are separated by 188 nucleotides Rru_A0205 and Rru_A0206 are separated by 72 nucleotides
Rru_A0203: Rru_A0203 - hypothetical protein (NCBI), at 253,299 to 253,607
_A0203
Rru_A0204: Rru_A0204 - BolA-like protein (NCBI), at 253,857 to 254,201
_A0204
Rru_A0205: Rru_A0205 - Heat shock protein DnaJ-like (NCBI), at 254,390 to 255,001
_A0205
Rru_A0206: Rru_A0206 - Cobalt chelatase, pCobS small subunit (NCBI), at 255,074 to 256,063
_A0206
Position (kb) 254
255
256 Strain fitness (log2 ratio) -2
-1
0
1 at 253.518 kb on + strand, within Rru_A0203 at 253.598 kb on + strand at 253.598 kb on + strand at 253.669 kb on - strand at 253.704 kb on - strand at 253.726 kb on + strand at 253.726 kb on + strand at 254.363 kb on + strand at 254.364 kb on - strand at 254.364 kb on - strand at 254.366 kb on + strand at 254.366 kb on + strand at 254.366 kb on + strand at 254.367 kb on - strand at 254.367 kb on - strand at 254.367 kb on - strand at 254.367 kb on - strand at 254.546 kb on + strand, within Rru_A0205 at 254.547 kb on - strand, within Rru_A0205 at 254.547 kb on - strand, within Rru_A0205 at 254.547 kb on - strand, within Rru_A0205 at 254.549 kb on + strand, within Rru_A0205 at 254.549 kb on + strand, within Rru_A0205 at 254.549 kb on + strand, within Rru_A0205 at 254.550 kb on - strand, within Rru_A0205 at 254.550 kb on - strand, within Rru_A0205 at 254.579 kb on + strand, within Rru_A0205 at 254.579 kb on + strand, within Rru_A0205 at 254.580 kb on - strand, within Rru_A0205 at 254.580 kb on - strand, within Rru_A0205 at 254.580 kb on - strand, within Rru_A0205 at 254.580 kb on - strand, within Rru_A0205 at 254.580 kb on - strand, within Rru_A0205 at 254.582 kb on - strand, within Rru_A0205 at 254.582 kb on - strand, within Rru_A0205 at 254.597 kb on + strand, within Rru_A0205 at 254.598 kb on - strand, within Rru_A0205 at 254.598 kb on - strand, within Rru_A0205 at 254.601 kb on - strand, within Rru_A0205 at 254.882 kb on + strand, within Rru_A0205 at 254.883 kb on - strand, within Rru_A0205 at 254.883 kb on - strand, within Rru_A0205 at 254.904 kb on - strand, within Rru_A0205 at 254.904 kb on - strand, within Rru_A0205 at 254.955 kb on + strand at 254.956 kb on - strand at 254.970 kb on - strand at 255.092 kb on + strand at 255.103 kb on + strand at 255.104 kb on - strand at 255.104 kb on - strand at 255.212 kb on + strand, within Rru_A0206 at 255.213 kb on - strand, within Rru_A0206 at 255.287 kb on + strand, within Rru_A0206 at 255.500 kb on + strand, within Rru_A0206 at 255.605 kb on + strand, within Rru_A0206 at 255.605 kb on + strand, within Rru_A0206 at 255.729 kb on - strand, within Rru_A0206 at 255.729 kb on - strand, within Rru_A0206 at 255.999 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 253,518 + Rru_A0203 0.71 +0.9 253,598 + +1.1 253,598 + -0.0 253,669 - +0.8 253,704 - +0.4 253,726 + -0.0 253,726 + -0.0 254,363 + +1.2 254,364 - +0.0 254,364 - +0.0 254,366 + +1.3 254,366 + +0.0 254,366 + +0.0 254,367 - +0.5 254,367 - -1.0 254,367 - +0.0 254,367 - +0.0 254,546 + Rru_A0205 0.25 +0.0 254,547 - Rru_A0205 0.26 +0.0 254,547 - Rru_A0205 0.26 +0.2 254,547 - Rru_A0205 0.26 +0.9 254,549 + Rru_A0205 0.26 -1.6 254,549 + Rru_A0205 0.26 +0.3 254,549 + Rru_A0205 0.26 +1.0 254,550 - Rru_A0205 0.26 +0.0 254,550 - Rru_A0205 0.26 +0.6 254,579 + Rru_A0205 0.31 +0.0 254,579 + Rru_A0205 0.31 +0.4 254,580 - Rru_A0205 0.31 +0.3 254,580 - Rru_A0205 0.31 +0.2 254,580 - Rru_A0205 0.31 +0.5 254,580 - Rru_A0205 0.31 +1.0 254,580 - Rru_A0205 0.31 +1.2 254,582 - Rru_A0205 0.31 +1.4 254,582 - Rru_A0205 0.31 +0.0 254,597 + Rru_A0205 0.34 +0.0 254,598 - Rru_A0205 0.34 +1.1 254,598 - Rru_A0205 0.34 +0.0 254,601 - Rru_A0205 0.34 +0.0 254,882 + Rru_A0205 0.80 +0.0 254,883 - Rru_A0205 0.81 +0.7 254,883 - Rru_A0205 0.81 +0.0 254,904 - Rru_A0205 0.84 +0.0 254,904 - Rru_A0205 0.84 +1.2 254,955 + -1.0 254,956 - +0.0 254,970 - -1.0 255,092 + -1.6 255,103 + -2.3 255,104 - +0.0 255,104 - +0.0 255,212 + Rru_A0206 0.14 +1.0 255,213 - Rru_A0206 0.14 +0.0 255,287 + Rru_A0206 0.22 +1.0 255,500 + Rru_A0206 0.43 +0.0 255,605 + Rru_A0206 0.54 +0.0 255,605 + Rru_A0206 0.54 -2.0 255,729 - Rru_A0206 0.66 +0.0 255,729 - Rru_A0206 0.66 +0.0 255,999 - +0.0
Or see this region's nucleotide sequence