Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0181

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0180 and Rru_A0181 are separated by 28 nucleotidesRru_A0181 and Rru_A0182 overlap by 4 nucleotides Rru_A0180: Rru_A0180 - hypothetical protein (NCBI), at 214,303 to 215,160 _A0180 Rru_A0181: Rru_A0181 - hypothetical protein (NCBI), at 215,189 to 215,983 _A0181 Rru_A0182: Rru_A0182 - hypothetical protein (NCBI), at 215,980 to 217,629 _A0182 Position (kb) 215 216Strain fitness (log2 ratio) -2 -1 0 1 2at 214.661 kb on + strand, within Rru_A0180at 214.661 kb on + strand, within Rru_A0180at 215.621 kb on - strand, within Rru_A0181at 215.756 kb on + strand, within Rru_A0181at 215.757 kb on - strand, within Rru_A0181at 215.845 kb on - strand, within Rru_A0181at 216.347 kb on - strand, within Rru_A0182at 216.347 kb on - strand, within Rru_A0182at 216.389 kb on + strand, within Rru_A0182at 216.390 kb on - strand, within Rru_A0182at 216.390 kb on - strand, within Rru_A0182at 216.785 kb on + strand, within Rru_A0182at 216.865 kb on + strand, within Rru_A0182at 216.866 kb on - strand, within Rru_A0182at 216.866 kb on - strand, within Rru_A0182at 216.872 kb on - strand, within Rru_A0182

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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214,661 + Rru_A0180 0.42 -0.0
214,661 + Rru_A0180 0.42 +1.3
215,621 - Rru_A0181 0.54 -0.0
215,756 + Rru_A0181 0.71 -0.5
215,757 - Rru_A0181 0.71 -0.0
215,845 - Rru_A0181 0.83 -2.2
216,347 - Rru_A0182 0.22 +1.4
216,347 - Rru_A0182 0.22 +0.6
216,389 + Rru_A0182 0.25 +1.1
216,390 - Rru_A0182 0.25 +1.0
216,390 - Rru_A0182 0.25 -0.0
216,785 + Rru_A0182 0.49 +1.1
216,865 + Rru_A0182 0.54 +1.9
216,866 - Rru_A0182 0.54 +1.9
216,866 - Rru_A0182 0.54 +1.1
216,872 - Rru_A0182 0.54 +1.0

Or see this region's nucleotide sequence