Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0154 and Rru_A0155 are separated by 197 nucleotides Rru_A0155 and Rru_A0156 are separated by 181 nucleotides
Rru_A0154: Rru_A0154 - Dihydrodipicolinate reductase (NCBI), at 178,588 to 179,385
_A0154
Rru_A0155: Rru_A0155 - Transcriptional Regulator, TetR family (NCBI), at 179,583 to 180,251
_A0155
Rru_A0156: Rru_A0156 - Secretion protein HlyD (NCBI), at 180,433 to 181,605
_A0156
Position (kb) 179
180
181 Strain fitness (log2 ratio) -1
0
1
2 at 179.488 kb on + strand at 179.489 kb on - strand at 179.585 kb on - strand at 179.593 kb on + strand at 179.824 kb on - strand, within Rru_A0155 at 180.043 kb on + strand, within Rru_A0155 at 180.043 kb on + strand, within Rru_A0155 at 180.043 kb on + strand, within Rru_A0155 at 180.043 kb on + strand, within Rru_A0155 at 180.044 kb on - strand, within Rru_A0155 at 180.044 kb on - strand, within Rru_A0155 at 180.103 kb on + strand, within Rru_A0155 at 180.104 kb on - strand, within Rru_A0155 at 180.262 kb on - strand at 180.279 kb on + strand at 180.279 kb on + strand at 180.279 kb on + strand at 180.280 kb on - strand at 180.280 kb on - strand at 180.280 kb on - strand at 180.280 kb on - strand at 180.313 kb on + strand at 180.314 kb on - strand at 180.622 kb on + strand, within Rru_A0156 at 180.622 kb on + strand, within Rru_A0156 at 180.622 kb on + strand, within Rru_A0156 at 180.623 kb on - strand, within Rru_A0156 at 180.623 kb on - strand, within Rru_A0156 at 180.624 kb on + strand, within Rru_A0156 at 180.667 kb on + strand, within Rru_A0156 at 180.731 kb on + strand, within Rru_A0156 at 180.731 kb on + strand, within Rru_A0156 at 180.731 kb on + strand, within Rru_A0156 at 180.731 kb on + strand, within Rru_A0156 at 180.731 kb on + strand, within Rru_A0156 at 180.732 kb on - strand, within Rru_A0156 at 180.732 kb on - strand, within Rru_A0156 at 180.732 kb on - strand, within Rru_A0156 at 180.732 kb on - strand, within Rru_A0156 at 180.732 kb on - strand, within Rru_A0156 at 180.736 kb on - strand, within Rru_A0156 at 181.192 kb on + strand, within Rru_A0156 at 181.192 kb on + strand, within Rru_A0156 at 181.192 kb on + strand, within Rru_A0156 at 181.192 kb on + strand, within Rru_A0156 at 181.192 kb on + strand, within Rru_A0156 at 181.192 kb on + strand, within Rru_A0156 at 181.192 kb on + strand, within Rru_A0156 at 181.192 kb on + strand, within Rru_A0156 at 181.193 kb on - strand, within Rru_A0156 at 181.193 kb on - strand, within Rru_A0156 at 181.193 kb on - strand, within Rru_A0156 at 181.193 kb on - strand, within Rru_A0156 at 181.193 kb on - strand, within Rru_A0156 at 181.193 kb on - strand, within Rru_A0156
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 179,488 + +2.0 179,489 - -0.0 179,585 - -0.0 179,593 + +0.2 179,824 - Rru_A0155 0.36 -1.0 180,043 + Rru_A0155 0.69 -0.0 180,043 + Rru_A0155 0.69 -1.0 180,043 + Rru_A0155 0.69 -0.0 180,043 + Rru_A0155 0.69 -0.0 180,044 - Rru_A0155 0.69 -0.0 180,044 - Rru_A0155 0.69 -0.0 180,103 + Rru_A0155 0.78 -0.0 180,104 - Rru_A0155 0.78 -0.0 180,262 - -0.0 180,279 + +1.0 180,279 + -0.0 180,279 + +0.9 180,280 - -0.0 180,280 - +1.2 180,280 - -0.0 180,280 - +1.4 180,313 + +1.1 180,314 - -0.0 180,622 + Rru_A0156 0.16 +1.2 180,622 + Rru_A0156 0.16 -0.0 180,622 + Rru_A0156 0.16 +1.1 180,623 - Rru_A0156 0.16 +0.2 180,623 - Rru_A0156 0.16 -0.0 180,624 + Rru_A0156 0.16 -0.0 180,667 + Rru_A0156 0.20 -0.0 180,731 + Rru_A0156 0.25 +0.7 180,731 + Rru_A0156 0.25 +0.5 180,731 + Rru_A0156 0.25 -0.0 180,731 + Rru_A0156 0.25 +1.3 180,731 + Rru_A0156 0.25 +1.1 180,732 - Rru_A0156 0.25 -0.0 180,732 - Rru_A0156 0.25 +0.9 180,732 - Rru_A0156 0.25 -0.0 180,732 - Rru_A0156 0.25 +0.9 180,732 - Rru_A0156 0.25 -0.0 180,736 - Rru_A0156 0.26 +1.3 181,192 + Rru_A0156 0.65 +1.2 181,192 + Rru_A0156 0.65 -0.0 181,192 + Rru_A0156 0.65 +0.5 181,192 + Rru_A0156 0.65 +1.3 181,192 + Rru_A0156 0.65 -0.0 181,192 + Rru_A0156 0.65 +0.4 181,192 + Rru_A0156 0.65 +1.6 181,192 + Rru_A0156 0.65 +1.1 181,193 - Rru_A0156 0.65 -0.0 181,193 - Rru_A0156 0.65 +1.3 181,193 - Rru_A0156 0.65 -0.0 181,193 - Rru_A0156 0.65 +0.9 181,193 - Rru_A0156 0.65 +0.9 181,193 - Rru_A0156 0.65 +1.6
Or see this region's nucleotide sequence