Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0144

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0142 and Rru_A0143 are separated by 78 nucleotidesRru_A0143 and Rru_A0144 overlap by 14 nucleotidesRru_A0144 and Rru_A0145 are separated by 156 nucleotidesRru_A0145 and Rru_A0146 are separated by 109 nucleotides Rru_A0142: Rru_A0142 - Putative cyclase (NCBI), at 165,819 to 166,781 _A0142 Rru_A0143: Rru_A0143 - GCN5-related N-acetyltransferase (NCBI), at 166,860 to 167,525 _A0143 Rru_A0144: Rru_A0144 - NADH:flavin oxidoreductase/NADH oxidase (NCBI), at 167,512 to 168,615 _A0144 Rru_A0145: Rru_A0145 - Transcriptional Regulator, TetR family (NCBI), at 168,772 to 169,380 _A0145 Rru_A0146: Rru_A0146 - Inorganic diphosphatase (NCBI), at 169,490 to 170,029 _A0146 Position (kb) 167 168 169Strain fitness (log2 ratio) -2 -1 0 1 2at 166.529 kb on - strand, within Rru_A0142at 166.630 kb on + strand, within Rru_A0142at 166.630 kb on + strand, within Rru_A0142at 166.630 kb on + strand, within Rru_A0142at 166.631 kb on - strand, within Rru_A0142at 166.631 kb on - strand, within Rru_A0142at 166.825 kb on + strandat 166.826 kb on - strandat 166.826 kb on - strandat 166.827 kb on + strandat 166.828 kb on - strandat 166.828 kb on - strandat 166.828 kb on - strandat 166.828 kb on - strandat 166.878 kb on + strandat 166.879 kb on - strandat 166.945 kb on - strand, within Rru_A0143at 166.945 kb on - strand, within Rru_A0143at 166.945 kb on - strand, within Rru_A0143at 166.945 kb on - strand, within Rru_A0143at 166.945 kb on - strand, within Rru_A0143at 166.945 kb on - strand, within Rru_A0143at 167.009 kb on + strand, within Rru_A0143at 167.009 kb on + strand, within Rru_A0143at 167.009 kb on + strand, within Rru_A0143at 167.010 kb on - strand, within Rru_A0143at 167.010 kb on - strand, within Rru_A0143at 167.148 kb on + strand, within Rru_A0143at 167.148 kb on + strand, within Rru_A0143at 167.148 kb on + strand, within Rru_A0143at 167.148 kb on + strand, within Rru_A0143at 167.149 kb on - strand, within Rru_A0143at 167.149 kb on - strand, within Rru_A0143at 167.149 kb on - strand, within Rru_A0143at 167.149 kb on - strand, within Rru_A0143at 167.149 kb on - strand, within Rru_A0143at 167.149 kb on - strand, within Rru_A0143at 167.149 kb on - strand, within Rru_A0143at 167.149 kb on - strand, within Rru_A0143at 167.153 kb on + strand, within Rru_A0143at 167.154 kb on - strand, within Rru_A0143at 167.200 kb on + strand, within Rru_A0143at 167.513 kb on + strandat 167.561 kb on + strandat 167.561 kb on + strandat 167.562 kb on - strandat 167.562 kb on - strandat 167.627 kb on + strand, within Rru_A0144at 167.627 kb on + strand, within Rru_A0144at 167.628 kb on - strand, within Rru_A0144at 167.628 kb on - strand, within Rru_A0144at 167.821 kb on + strand, within Rru_A0144at 167.821 kb on + strand, within Rru_A0144at 167.821 kb on + strand, within Rru_A0144at 167.821 kb on + strand, within Rru_A0144at 167.822 kb on - strand, within Rru_A0144at 167.822 kb on - strand, within Rru_A0144at 167.871 kb on + strand, within Rru_A0144at 167.872 kb on - strand, within Rru_A0144at 168.014 kb on + strand, within Rru_A0144at 168.014 kb on + strand, within Rru_A0144at 168.015 kb on - strand, within Rru_A0144at 168.065 kb on + strand, within Rru_A0144at 168.066 kb on - strand, within Rru_A0144at 168.530 kb on + strandat 168.737 kb on - strandat 168.737 kb on - strandat 168.850 kb on + strand, within Rru_A0145at 169.082 kb on + strand, within Rru_A0145at 169.082 kb on + strand, within Rru_A0145at 169.169 kb on + strand, within Rru_A0145at 169.169 kb on + strand, within Rru_A0145at 169.170 kb on - strand, within Rru_A0145at 169.170 kb on - strand, within Rru_A0145at 169.218 kb on + strand, within Rru_A0145at 169.218 kb on + strand, within Rru_A0145at 169.218 kb on + strand, within Rru_A0145at 169.218 kb on + strand, within Rru_A0145at 169.219 kb on - strand, within Rru_A0145at 169.219 kb on - strand, within Rru_A0145at 169.220 kb on + strand, within Rru_A0145at 169.220 kb on + strand, within Rru_A0145at 169.220 kb on + strand, within Rru_A0145at 169.220 kb on + strand, within Rru_A0145at 169.220 kb on + strand, within Rru_A0145at 169.221 kb on - strand, within Rru_A0145at 169.221 kb on - strand, within Rru_A0145at 169.221 kb on - strand, within Rru_A0145

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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166,529 - Rru_A0142 0.74 +1.3
166,630 + Rru_A0142 0.84 +1.9
166,630 + Rru_A0142 0.84 -0.0
166,630 + Rru_A0142 0.84 +1.1
166,631 - Rru_A0142 0.84 +0.8
166,631 - Rru_A0142 0.84 +1.3
166,825 + +1.1
166,826 - +1.2
166,826 - -0.0
166,827 + -0.0
166,828 - -0.0
166,828 - -1.0
166,828 - +0.3
166,828 - +1.2
166,878 + -0.0
166,879 - -0.0
166,945 - Rru_A0143 0.13 -0.0
166,945 - Rru_A0143 0.13 +1.9
166,945 - Rru_A0143 0.13 +1.5
166,945 - Rru_A0143 0.13 -2.0
166,945 - Rru_A0143 0.13 -0.0
166,945 - Rru_A0143 0.13 +1.3
167,009 + Rru_A0143 0.22 -0.0
167,009 + Rru_A0143 0.22 -1.0
167,009 + Rru_A0143 0.22 +0.6
167,010 - Rru_A0143 0.23 -0.2
167,010 - Rru_A0143 0.23 +0.8
167,148 + Rru_A0143 0.43 -0.0
167,148 + Rru_A0143 0.43 -0.0
167,148 + Rru_A0143 0.43 -0.0
167,148 + Rru_A0143 0.43 -0.0
167,149 - Rru_A0143 0.43 -0.0
167,149 - Rru_A0143 0.43 -0.0
167,149 - Rru_A0143 0.43 -0.0
167,149 - Rru_A0143 0.43 -0.0
167,149 - Rru_A0143 0.43 -0.0
167,149 - Rru_A0143 0.43 +0.2
167,149 - Rru_A0143 0.43 +0.6
167,149 - Rru_A0143 0.43 -0.0
167,153 + Rru_A0143 0.44 -0.0
167,154 - Rru_A0143 0.44 +0.5
167,200 + Rru_A0143 0.51 +1.5
167,513 + -0.0
167,561 + -0.0
167,561 + -0.0
167,562 - +0.8
167,562 - +0.7
167,627 + Rru_A0144 0.10 -0.0
167,627 + Rru_A0144 0.10 +0.4
167,628 - Rru_A0144 0.11 +0.2
167,628 - Rru_A0144 0.11 -0.0
167,821 + Rru_A0144 0.28 -0.0
167,821 + Rru_A0144 0.28 +1.7
167,821 + Rru_A0144 0.28 +1.3
167,821 + Rru_A0144 0.28 -1.0
167,822 - Rru_A0144 0.28 -0.0
167,822 - Rru_A0144 0.28 -0.0
167,871 + Rru_A0144 0.33 +1.0
167,872 - Rru_A0144 0.33 +1.0
168,014 + Rru_A0144 0.45 +0.7
168,014 + Rru_A0144 0.45 +2.1
168,015 - Rru_A0144 0.46 +0.5
168,065 + Rru_A0144 0.50 +1.1
168,066 - Rru_A0144 0.50 +0.3
168,530 + +0.7
168,737 - +1.5
168,737 - -0.0
168,850 + Rru_A0145 0.13 -0.0
169,082 + Rru_A0145 0.51 -0.0
169,082 + Rru_A0145 0.51 +1.3
169,169 + Rru_A0145 0.65 -0.0
169,169 + Rru_A0145 0.65 +1.0
169,170 - Rru_A0145 0.65 +1.3
169,170 - Rru_A0145 0.65 -0.0
169,218 + Rru_A0145 0.73 +0.9
169,218 + Rru_A0145 0.73 +1.0
169,218 + Rru_A0145 0.73 +1.1
169,218 + Rru_A0145 0.73 +1.1
169,219 - Rru_A0145 0.73 +1.3
169,219 - Rru_A0145 0.73 -0.0
169,220 + Rru_A0145 0.74 -0.0
169,220 + Rru_A0145 0.74 +0.9
169,220 + Rru_A0145 0.74 -0.0
169,220 + Rru_A0145 0.74 +1.2
169,220 + Rru_A0145 0.74 +1.0
169,221 - Rru_A0145 0.74 +1.1
169,221 - Rru_A0145 0.74 +1.2
169,221 - Rru_A0145 0.74 -0.0

Or see this region's nucleotide sequence