Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0087

Experiment: Succinic Acid; Light intensity 9 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0085 and Rru_A0086 overlap by 1 nucleotidesRru_A0086 and Rru_A0087 are separated by 1 nucleotidesRru_A0087 and Rru_A0088 are separated by 178 nucleotides Rru_A0085: Rru_A0085 - Putative diguanylate cyclase (GGDEF domain) (NCBI), at 98,274 to 99,635 _A0085 Rru_A0086: Rru_A0086 - Protein of unknown function DUF188 (NCBI), at 99,635 to 100,087 _A0086 Rru_A0087: Rru_A0087 - HI0933-like protein (NCBI), at 100,089 to 101,330 _A0087 Rru_A0088: Rru_A0088 - Zinc-containing alcohol dehydrogenase superfamily (NCBI), at 101,509 to 102,531 _A0088 Position (kb) 100 101 102Strain fitness (log2 ratio) -1 0 1 2at 99.129 kb on + strand, within Rru_A0085at 99.130 kb on - strand, within Rru_A0085at 99.130 kb on - strand, within Rru_A0085at 99.226 kb on + strand, within Rru_A0085at 99.503 kb on + strandat 99.504 kb on - strandat 99.535 kb on - strandat 99.535 kb on - strandat 99.535 kb on - strandat 99.612 kb on - strandat 99.839 kb on - strand, within Rru_A0086at 99.839 kb on - strand, within Rru_A0086at 100.833 kb on + strand, within Rru_A0087at 100.833 kb on + strand, within Rru_A0087at 100.833 kb on + strand, within Rru_A0087at 100.833 kb on + strand, within Rru_A0087at 100.834 kb on - strand, within Rru_A0087at 100.834 kb on - strand, within Rru_A0087at 100.834 kb on - strand, within Rru_A0087at 100.834 kb on - strand, within Rru_A0087at 100.834 kb on - strand, within Rru_A0087at 100.834 kb on - strand, within Rru_A0087at 100.834 kb on - strand, within Rru_A0087at 100.834 kb on - strand, within Rru_A0087at 100.834 kb on - strand, within Rru_A0087at 101.241 kb on + strandat 101.242 kb on - strandat 101.375 kb on - strandat 101.405 kb on - strandat 101.647 kb on - strand, within Rru_A0088at 101.647 kb on - strand, within Rru_A0088at 101.770 kb on + strand, within Rru_A0088at 101.770 kb on + strand, within Rru_A0088at 101.771 kb on - strand, within Rru_A0088at 101.771 kb on - strand, within Rru_A0088at 102.291 kb on + strand, within Rru_A0088at 102.291 kb on + strand, within Rru_A0088at 102.292 kb on - strand, within Rru_A0088at 102.292 kb on - strand, within Rru_A0088at 102.328 kb on + strand, within Rru_A0088at 102.328 kb on + strand, within Rru_A0088at 102.328 kb on + strand, within Rru_A0088at 102.329 kb on - strand, within Rru_A0088at 102.329 kb on - strand, within Rru_A0088at 102.329 kb on - strand, within Rru_A0088at 102.329 kb on - strand, within Rru_A0088

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
remove
99,129 + Rru_A0085 0.63 +0.8
99,130 - Rru_A0085 0.63 +2.2
99,130 - Rru_A0085 0.63 -0.3
99,226 + Rru_A0085 0.70 -0.0
99,503 + -0.0
99,504 - +1.0
99,535 - +0.7
99,535 - -0.0
99,535 - +1.6
99,612 - -0.0
99,839 - Rru_A0086 0.45 +0.8
99,839 - Rru_A0086 0.45 -0.9
100,833 + Rru_A0087 0.60 -0.0
100,833 + Rru_A0087 0.60 +1.4
100,833 + Rru_A0087 0.60 +0.4
100,833 + Rru_A0087 0.60 +1.1
100,834 - Rru_A0087 0.60 +1.8
100,834 - Rru_A0087 0.60 +1.2
100,834 - Rru_A0087 0.60 +1.0
100,834 - Rru_A0087 0.60 -0.0
100,834 - Rru_A0087 0.60 -1.0
100,834 - Rru_A0087 0.60 +1.1
100,834 - Rru_A0087 0.60 -0.0
100,834 - Rru_A0087 0.60 -0.0
100,834 - Rru_A0087 0.60 -0.0
101,241 + +1.7
101,242 - +0.3
101,375 - -0.0
101,405 - +0.4
101,647 - Rru_A0088 0.13 +1.3
101,647 - Rru_A0088 0.13 +0.1
101,770 + Rru_A0088 0.26 +1.0
101,770 + Rru_A0088 0.26 -1.0
101,771 - Rru_A0088 0.26 -0.0
101,771 - Rru_A0088 0.26 +1.6
102,291 + Rru_A0088 0.76 +1.1
102,291 + Rru_A0088 0.76 -0.0
102,292 - Rru_A0088 0.77 -0.0
102,292 - Rru_A0088 0.77 +2.2
102,328 + Rru_A0088 0.80 +0.5
102,328 + Rru_A0088 0.80 +1.2
102,328 + Rru_A0088 0.80 -1.0
102,329 - Rru_A0088 0.80 -0.0
102,329 - Rru_A0088 0.80 -0.0
102,329 - Rru_A0088 0.80 -0.0
102,329 - Rru_A0088 0.80 +1.2

Or see this region's nucleotide sequence