Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0085

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0084 and Rru_A0085 are separated by 88 nucleotidesRru_A0085 and Rru_A0086 overlap by 1 nucleotidesRru_A0086 and Rru_A0087 are separated by 1 nucleotides Rru_A0084: Rru_A0084 - Peptidase S33, proline iminopeptidase 1 (NCBI), at 97,229 to 98,185 _A0084 Rru_A0085: Rru_A0085 - Putative diguanylate cyclase (GGDEF domain) (NCBI), at 98,274 to 99,635 _A0085 Rru_A0086: Rru_A0086 - Protein of unknown function DUF188 (NCBI), at 99,635 to 100,087 _A0086 Rru_A0087: Rru_A0087 - HI0933-like protein (NCBI), at 100,089 to 101,330 _A0087 Position (kb) 98 99 100Strain fitness (log2 ratio) -2 -1 0 1 2at 97.409 kb on + strand, within Rru_A0084at 97.410 kb on - strand, within Rru_A0084at 97.410 kb on - strand, within Rru_A0084at 97.438 kb on + strand, within Rru_A0084at 97.438 kb on + strand, within Rru_A0084at 97.439 kb on - strand, within Rru_A0084at 97.439 kb on - strand, within Rru_A0084at 97.492 kb on + strand, within Rru_A0084at 97.495 kb on + strand, within Rru_A0084at 97.495 kb on + strand, within Rru_A0084at 97.495 kb on + strand, within Rru_A0084at 97.495 kb on + strand, within Rru_A0084at 97.496 kb on - strand, within Rru_A0084at 97.496 kb on - strand, within Rru_A0084at 97.496 kb on - strand, within Rru_A0084at 97.775 kb on + strand, within Rru_A0084at 97.778 kb on + strand, within Rru_A0084at 97.778 kb on + strand, within Rru_A0084at 97.841 kb on + strand, within Rru_A0084at 97.841 kb on + strand, within Rru_A0084at 97.842 kb on - strand, within Rru_A0084at 97.931 kb on + strand, within Rru_A0084at 97.931 kb on + strand, within Rru_A0084at 97.931 kb on + strand, within Rru_A0084at 97.931 kb on + strand, within Rru_A0084at 97.932 kb on - strand, within Rru_A0084at 97.932 kb on - strand, within Rru_A0084at 97.932 kb on - strand, within Rru_A0084at 97.932 kb on - strand, within Rru_A0084at 97.932 kb on - strand, within Rru_A0084at 97.932 kb on - strand, within Rru_A0084at 98.113 kb on + strandat 98.114 kb on - strandat 98.227 kb on + strandat 98.227 kb on + strandat 98.227 kb on + strandat 98.227 kb on + strandat 98.228 kb on - strandat 98.228 kb on - strandat 98.228 kb on - strandat 98.228 kb on - strandat 98.228 kb on - strandat 98.363 kb on + strandat 98.363 kb on + strandat 98.363 kb on + strandat 98.363 kb on + strandat 98.364 kb on - strandat 98.364 kb on - strandat 98.470 kb on + strand, within Rru_A0085at 98.470 kb on + strand, within Rru_A0085at 98.470 kb on + strand, within Rru_A0085at 98.470 kb on + strand, within Rru_A0085at 98.471 kb on - strand, within Rru_A0085at 98.471 kb on - strand, within Rru_A0085at 98.529 kb on + strand, within Rru_A0085at 98.529 kb on + strand, within Rru_A0085at 98.529 kb on + strand, within Rru_A0085at 98.529 kb on + strand, within Rru_A0085at 98.530 kb on - strand, within Rru_A0085at 98.530 kb on - strand, within Rru_A0085at 98.530 kb on - strand, within Rru_A0085at 98.606 kb on + strand, within Rru_A0085at 98.622 kb on + strand, within Rru_A0085at 98.622 kb on + strand, within Rru_A0085at 98.623 kb on - strand, within Rru_A0085at 98.623 kb on - strand, within Rru_A0085at 98.623 kb on - strand, within Rru_A0085at 98.636 kb on + strand, within Rru_A0085at 98.636 kb on + strand, within Rru_A0085at 98.637 kb on - strand, within Rru_A0085at 98.655 kb on + strand, within Rru_A0085at 98.655 kb on + strand, within Rru_A0085at 98.656 kb on - strand, within Rru_A0085at 98.739 kb on + strand, within Rru_A0085at 98.740 kb on - strand, within Rru_A0085at 98.741 kb on + strand, within Rru_A0085at 98.742 kb on - strand, within Rru_A0085at 98.764 kb on - strand, within Rru_A0085at 98.854 kb on - strand, within Rru_A0085at 98.856 kb on + strand, within Rru_A0085at 98.856 kb on + strand, within Rru_A0085at 98.856 kb on + strand, within Rru_A0085at 98.856 kb on + strand, within Rru_A0085at 98.856 kb on + strand, within Rru_A0085at 98.857 kb on - strand, within Rru_A0085at 98.857 kb on - strand, within Rru_A0085at 98.857 kb on - strand, within Rru_A0085at 98.857 kb on - strand, within Rru_A0085at 98.857 kb on - strand, within Rru_A0085at 98.857 kb on - strand, within Rru_A0085at 98.857 kb on - strand, within Rru_A0085at 98.982 kb on + strand, within Rru_A0085at 98.982 kb on + strand, within Rru_A0085at 99.066 kb on + strand, within Rru_A0085at 99.066 kb on + strand, within Rru_A0085at 99.066 kb on + strand, within Rru_A0085at 99.067 kb on - strand, within Rru_A0085at 99.067 kb on - strand, within Rru_A0085at 99.067 kb on - strand, within Rru_A0085at 99.067 kb on - strand, within Rru_A0085at 99.068 kb on + strand, within Rru_A0085at 99.068 kb on + strand, within Rru_A0085at 99.068 kb on + strand, within Rru_A0085at 99.069 kb on - strand, within Rru_A0085at 99.069 kb on - strand, within Rru_A0085at 99.129 kb on + strand, within Rru_A0085at 99.130 kb on - strand, within Rru_A0085at 99.130 kb on - strand, within Rru_A0085at 99.226 kb on + strand, within Rru_A0085at 99.503 kb on + strandat 99.504 kb on - strandat 99.535 kb on - strandat 99.535 kb on - strandat 99.535 kb on - strandat 99.612 kb on - strandat 99.839 kb on - strand, within Rru_A0086at 99.839 kb on - strand, within Rru_A0086

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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97,409 + Rru_A0084 0.19 -0.0
97,410 - Rru_A0084 0.19 +1.1
97,410 - Rru_A0084 0.19 -0.0
97,438 + Rru_A0084 0.22 +1.8
97,438 + Rru_A0084 0.22 +0.8
97,439 - Rru_A0084 0.22 +1.2
97,439 - Rru_A0084 0.22 +1.3
97,492 + Rru_A0084 0.27 -1.6
97,495 + Rru_A0084 0.28 -0.0
97,495 + Rru_A0084 0.28 +1.1
97,495 + Rru_A0084 0.28 -2.0
97,495 + Rru_A0084 0.28 -0.0
97,496 - Rru_A0084 0.28 +0.9
97,496 - Rru_A0084 0.28 +1.6
97,496 - Rru_A0084 0.28 +1.5
97,775 + Rru_A0084 0.57 +0.9
97,778 + Rru_A0084 0.57 +1.3
97,778 + Rru_A0084 0.57 +0.7
97,841 + Rru_A0084 0.64 +1.3
97,841 + Rru_A0084 0.64 +1.0
97,842 - Rru_A0084 0.64 -0.0
97,931 + Rru_A0084 0.73 -0.2
97,931 + Rru_A0084 0.73 +0.8
97,931 + Rru_A0084 0.73 -0.0
97,931 + Rru_A0084 0.73 +1.1
97,932 - Rru_A0084 0.73 -0.0
97,932 - Rru_A0084 0.73 -1.6
97,932 - Rru_A0084 0.73 +1.4
97,932 - Rru_A0084 0.73 -0.0
97,932 - Rru_A0084 0.73 +1.1
97,932 - Rru_A0084 0.73 +0.1
98,113 + -1.0
98,114 - +0.8
98,227 + +1.4
98,227 + -0.0
98,227 + +1.0
98,227 + -0.0
98,228 - -0.0
98,228 - -0.0
98,228 - +1.1
98,228 - -1.0
98,228 - +1.5
98,363 + +0.6
98,363 + +1.0
98,363 + -0.0
98,363 + -0.0
98,364 - -0.0
98,364 - +1.3
98,470 + Rru_A0085 0.14 +1.1
98,470 + Rru_A0085 0.14 +1.2
98,470 + Rru_A0085 0.14 -0.0
98,470 + Rru_A0085 0.14 -0.0
98,471 - Rru_A0085 0.14 -2.3
98,471 - Rru_A0085 0.14 +1.0
98,529 + Rru_A0085 0.19 +0.8
98,529 + Rru_A0085 0.19 +0.7
98,529 + Rru_A0085 0.19 +0.6
98,529 + Rru_A0085 0.19 +0.6
98,530 - Rru_A0085 0.19 +1.0
98,530 - Rru_A0085 0.19 -0.0
98,530 - Rru_A0085 0.19 -0.0
98,606 + Rru_A0085 0.24 +1.4
98,622 + Rru_A0085 0.26 +0.6
98,622 + Rru_A0085 0.26 +0.5
98,623 - Rru_A0085 0.26 -0.0
98,623 - Rru_A0085 0.26 +1.4
98,623 - Rru_A0085 0.26 -0.0
98,636 + Rru_A0085 0.27 -1.0
98,636 + Rru_A0085 0.27 +1.5
98,637 - Rru_A0085 0.27 +1.1
98,655 + Rru_A0085 0.28 +1.7
98,655 + Rru_A0085 0.28 -0.0
98,656 - Rru_A0085 0.28 -0.0
98,739 + Rru_A0085 0.34 -0.0
98,740 - Rru_A0085 0.34 +1.2
98,741 + Rru_A0085 0.34 -1.0
98,742 - Rru_A0085 0.34 -0.0
98,764 - Rru_A0085 0.36 +0.5
98,854 - Rru_A0085 0.43 -0.2
98,856 + Rru_A0085 0.43 -0.0
98,856 + Rru_A0085 0.43 +0.9
98,856 + Rru_A0085 0.43 +0.7
98,856 + Rru_A0085 0.43 +0.9
98,856 + Rru_A0085 0.43 +1.0
98,857 - Rru_A0085 0.43 -0.0
98,857 - Rru_A0085 0.43 +1.5
98,857 - Rru_A0085 0.43 -1.0
98,857 - Rru_A0085 0.43 -0.0
98,857 - Rru_A0085 0.43 -0.0
98,857 - Rru_A0085 0.43 +1.3
98,857 - Rru_A0085 0.43 +1.2
98,982 + Rru_A0085 0.52 +0.9
98,982 + Rru_A0085 0.52 -0.0
99,066 + Rru_A0085 0.58 +1.4
99,066 + Rru_A0085 0.58 -0.0
99,066 + Rru_A0085 0.58 +1.0
99,067 - Rru_A0085 0.58 +0.4
99,067 - Rru_A0085 0.58 -0.0
99,067 - Rru_A0085 0.58 -1.0
99,067 - Rru_A0085 0.58 +0.7
99,068 + Rru_A0085 0.58 +1.2
99,068 + Rru_A0085 0.58 -0.0
99,068 + Rru_A0085 0.58 -0.0
99,069 - Rru_A0085 0.58 -0.0
99,069 - Rru_A0085 0.58 +1.6
99,129 + Rru_A0085 0.63 +0.8
99,130 - Rru_A0085 0.63 +2.2
99,130 - Rru_A0085 0.63 -0.3
99,226 + Rru_A0085 0.70 -0.0
99,503 + -0.0
99,504 - +1.0
99,535 - +0.7
99,535 - -0.0
99,535 - +1.6
99,612 - -0.0
99,839 - Rru_A0086 0.45 +0.8
99,839 - Rru_A0086 0.45 -0.9

Or see this region's nucleotide sequence