Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0072 and Rru_A0073 are separated by 412 nucleotides Rru_A0073 and Rru_A0074 are separated by 116 nucleotides Rru_A0074 and Rru_A0075 overlap by 4 nucleotides Rru_A0075 and Rru_A0076 are separated by 155 nucleotides
Rru_A0072: Rru_A0072 - chaperone protein Hsp90 (NCBI), at 83,004 to 84,884
_A0072
Rru_A0073: Rru_A0073 - ribosomal subunit interface protein, putative (NCBI), at 85,297 to 85,677
_A0073
Rru_A0074: Rru_A0074 - Helicase-like (NCBI), at 85,794 to 88,994
_A0074
Rru_A0075: Rru_A0075 - RNA-binding S4 (NCBI), at 88,991 to 89,425
_A0075
Rru_A0076: Rru_A0076 - Protein of unknown function DUF1332 (NCBI), at 89,581 to 90,036
_A0076
Position (kb) 85
86
87
88
89 Strain fitness (log2 ratio) -2
-1
0
1
2 at 85.072 kb on + strand at 85.079 kb on - strand at 85.151 kb on + strand at 85.271 kb on + strand at 85.271 kb on + strand at 85.271 kb on + strand at 85.272 kb on - strand at 85.272 kb on - strand at 85.403 kb on + strand, within Rru_A0073 at 85.404 kb on - strand, within Rru_A0073 at 85.438 kb on - strand, within Rru_A0073 at 85.458 kb on + strand, within Rru_A0073 at 85.458 kb on + strand, within Rru_A0073 at 85.459 kb on - strand, within Rru_A0073 at 85.621 kb on - strand, within Rru_A0073 at 85.675 kb on + strand at 85.675 kb on + strand at 85.759 kb on + strand at 86.023 kb on - strand at 86.023 kb on - strand at 86.023 kb on - strand at 86.259 kb on + strand, within Rru_A0074 at 86.259 kb on + strand, within Rru_A0074 at 86.259 kb on + strand, within Rru_A0074 at 86.259 kb on + strand, within Rru_A0074 at 86.259 kb on + strand, within Rru_A0074 at 86.331 kb on + strand, within Rru_A0074 at 86.332 kb on - strand, within Rru_A0074 at 86.332 kb on - strand, within Rru_A0074 at 86.332 kb on - strand, within Rru_A0074 at 86.427 kb on + strand, within Rru_A0074 at 86.428 kb on - strand, within Rru_A0074 at 86.448 kb on + strand, within Rru_A0074 at 86.448 kb on + strand, within Rru_A0074 at 86.449 kb on - strand, within Rru_A0074 at 86.449 kb on - strand, within Rru_A0074 at 86.597 kb on + strand, within Rru_A0074 at 86.597 kb on + strand, within Rru_A0074 at 86.598 kb on - strand, within Rru_A0074 at 86.652 kb on - strand, within Rru_A0074 at 86.969 kb on - strand, within Rru_A0074 at 87.082 kb on + strand, within Rru_A0074 at 87.090 kb on + strand, within Rru_A0074 at 87.090 kb on + strand, within Rru_A0074 at 87.090 kb on + strand, within Rru_A0074 at 87.090 kb on + strand, within Rru_A0074 at 87.090 kb on + strand, within Rru_A0074 at 87.090 kb on + strand, within Rru_A0074 at 87.090 kb on + strand, within Rru_A0074 at 87.090 kb on + strand, within Rru_A0074 at 87.090 kb on + strand, within Rru_A0074 at 87.090 kb on + strand, within Rru_A0074 at 87.090 kb on + strand, within Rru_A0074 at 87.091 kb on - strand, within Rru_A0074 at 87.091 kb on - strand, within Rru_A0074 at 87.091 kb on - strand, within Rru_A0074 at 87.091 kb on - strand, within Rru_A0074 at 87.091 kb on - strand, within Rru_A0074 at 87.091 kb on - strand, within Rru_A0074 at 87.091 kb on - strand, within Rru_A0074 at 87.154 kb on + strand, within Rru_A0074 at 87.154 kb on + strand, within Rru_A0074 at 87.978 kb on + strand, within Rru_A0074 at 87.978 kb on + strand, within Rru_A0074 at 87.979 kb on - strand, within Rru_A0074 at 88.029 kb on - strand, within Rru_A0074 at 88.029 kb on - strand, within Rru_A0074 at 88.029 kb on - strand, within Rru_A0074 at 88.029 kb on - strand, within Rru_A0074 at 88.029 kb on - strand, within Rru_A0074 at 88.576 kb on - strand, within Rru_A0074 at 88.867 kb on - strand at 88.911 kb on + strand at 88.911 kb on + strand at 88.912 kb on - strand at 88.955 kb on + strand at 88.956 kb on - strand at 88.972 kb on + strand at 88.972 kb on + strand at 88.973 kb on - strand at 89.074 kb on + strand, within Rru_A0075 at 89.074 kb on + strand, within Rru_A0075 at 89.075 kb on - strand, within Rru_A0075 at 89.087 kb on + strand, within Rru_A0075 at 89.088 kb on - strand, within Rru_A0075 at 89.294 kb on + strand, within Rru_A0075 at 89.295 kb on - strand, within Rru_A0075 at 89.423 kb on + strand at 89.467 kb on + strand at 89.467 kb on + strand at 89.468 kb on - strand at 89.468 kb on - strand at 89.580 kb on + strand at 89.580 kb on + strand at 89.580 kb on + strand at 89.580 kb on + strand at 89.580 kb on + strand at 89.580 kb on + strand at 89.581 kb on - strand at 89.828 kb on - strand, within Rru_A0076 at 89.863 kb on + strand, within Rru_A0076 at 89.908 kb on + strand, within Rru_A0076 at 89.908 kb on + strand, within Rru_A0076 at 89.909 kb on - strand, within Rru_A0076 at 89.909 kb on - strand, within Rru_A0076 at 89.909 kb on - strand, within Rru_A0076 at 89.971 kb on + strand, within Rru_A0076 at 89.972 kb on - strand, within Rru_A0076 at 89.972 kb on - strand, within Rru_A0076 at 89.972 kb on - strand, within Rru_A0076 at 89.972 kb on - strand, within Rru_A0076 at 89.972 kb on - strand, within Rru_A0076
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 85,072 + -0.0 85,079 - +0.8 85,151 + +1.0 85,271 + +1.8 85,271 + -0.0 85,271 + +1.5 85,272 - -0.0 85,272 - -1.0 85,403 + Rru_A0073 0.28 +0.5 85,404 - Rru_A0073 0.28 -0.0 85,438 - Rru_A0073 0.37 -0.3 85,458 + Rru_A0073 0.42 +0.0 85,458 + Rru_A0073 0.42 -0.0 85,459 - Rru_A0073 0.43 -0.0 85,621 - Rru_A0073 0.85 -1.0 85,675 + +0.7 85,675 + -1.6 85,759 + -0.0 86,023 - -0.0 86,023 - -0.0 86,023 - +0.4 86,259 + Rru_A0074 0.15 +1.6 86,259 + Rru_A0074 0.15 -0.0 86,259 + Rru_A0074 0.15 -0.0 86,259 + Rru_A0074 0.15 -0.0 86,259 + Rru_A0074 0.15 +1.0 86,331 + Rru_A0074 0.17 -0.0 86,332 - Rru_A0074 0.17 +0.5 86,332 - Rru_A0074 0.17 +1.0 86,332 - Rru_A0074 0.17 +1.1 86,427 + Rru_A0074 0.20 +0.5 86,428 - Rru_A0074 0.20 -0.0 86,448 + Rru_A0074 0.20 -0.0 86,448 + Rru_A0074 0.20 -0.0 86,449 - Rru_A0074 0.20 -0.0 86,449 - Rru_A0074 0.20 +0.5 86,597 + Rru_A0074 0.25 -0.0 86,597 + Rru_A0074 0.25 +0.2 86,598 - Rru_A0074 0.25 +0.2 86,652 - Rru_A0074 0.27 +0.7 86,969 - Rru_A0074 0.37 -0.0 87,082 + Rru_A0074 0.40 +0.6 87,090 + Rru_A0074 0.40 -0.0 87,090 + Rru_A0074 0.40 -1.0 87,090 + Rru_A0074 0.40 +0.8 87,090 + Rru_A0074 0.40 +0.6 87,090 + Rru_A0074 0.40 -0.4 87,090 + Rru_A0074 0.40 +0.3 87,090 + Rru_A0074 0.40 -0.0 87,090 + Rru_A0074 0.40 -0.0 87,090 + Rru_A0074 0.40 -0.0 87,090 + Rru_A0074 0.40 +0.6 87,090 + Rru_A0074 0.40 -0.0 87,091 - Rru_A0074 0.41 -0.0 87,091 - Rru_A0074 0.41 -0.0 87,091 - Rru_A0074 0.41 +0.9 87,091 - Rru_A0074 0.41 +1.0 87,091 - Rru_A0074 0.41 +0.5 87,091 - Rru_A0074 0.41 -0.0 87,091 - Rru_A0074 0.41 -0.0 87,154 + Rru_A0074 0.42 +0.8 87,154 + Rru_A0074 0.42 +1.4 87,978 + Rru_A0074 0.68 -0.0 87,978 + Rru_A0074 0.68 -1.6 87,979 - Rru_A0074 0.68 -0.0 88,029 - Rru_A0074 0.70 +0.9 88,029 - Rru_A0074 0.70 +0.6 88,029 - Rru_A0074 0.70 -1.7 88,029 - Rru_A0074 0.70 +1.2 88,029 - Rru_A0074 0.70 -0.0 88,576 - Rru_A0074 0.87 -0.0 88,867 - -0.0 88,911 + +0.2 88,911 + -0.0 88,912 - -0.0 88,955 + -0.1 88,956 - -0.0 88,972 + -0.0 88,972 + +0.1 88,973 - +0.8 89,074 + Rru_A0075 0.19 +0.1 89,074 + Rru_A0075 0.19 -0.0 89,075 - Rru_A0075 0.19 +1.3 89,087 + Rru_A0075 0.22 +2.2 89,088 - Rru_A0075 0.22 -0.0 89,294 + Rru_A0075 0.70 +0.1 89,295 - Rru_A0075 0.70 -0.0 89,423 + -1.6 89,467 + -0.6 89,467 + -2.3 89,468 - -0.0 89,468 - +2.6 89,580 + +0.5 89,580 + +2.3 89,580 + -0.0 89,580 + -0.0 89,580 + +1.2 89,580 + +0.4 89,581 - +0.4 89,828 - Rru_A0076 0.54 +1.1 89,863 + Rru_A0076 0.62 -0.0 89,908 + Rru_A0076 0.72 -0.0 89,908 + Rru_A0076 0.72 +0.7 89,909 - Rru_A0076 0.72 +2.3 89,909 - Rru_A0076 0.72 -0.0 89,909 - Rru_A0076 0.72 +1.1 89,971 + Rru_A0076 0.86 +2.6 89,972 - Rru_A0076 0.86 -0.0 89,972 - Rru_A0076 0.86 -0.0 89,972 - Rru_A0076 0.86 +0.7 89,972 - Rru_A0076 0.86 -0.0 89,972 - Rru_A0076 0.86 +1.3
Or see this region's nucleotide sequence