Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0072 and Rru_A0073 are separated by 412 nucleotides Rru_A0073 and Rru_A0074 are separated by 116 nucleotides
Rru_A0072: Rru_A0072 - chaperone protein Hsp90 (NCBI), at 83,004 to 84,884
_A0072
Rru_A0073: Rru_A0073 - ribosomal subunit interface protein, putative (NCBI), at 85,297 to 85,677
_A0073
Rru_A0074: Rru_A0074 - Helicase-like (NCBI), at 85,794 to 88,994
_A0074
Position (kb) 85
86 Strain fitness (log2 ratio) -1
0
1
2 at 85.072 kb on + strand at 85.079 kb on - strand at 85.151 kb on + strand at 85.271 kb on + strand at 85.271 kb on + strand at 85.271 kb on + strand at 85.272 kb on - strand at 85.272 kb on - strand at 85.403 kb on + strand, within Rru_A0073 at 85.404 kb on - strand, within Rru_A0073 at 85.438 kb on - strand, within Rru_A0073 at 85.458 kb on + strand, within Rru_A0073 at 85.458 kb on + strand, within Rru_A0073 at 85.459 kb on - strand, within Rru_A0073 at 85.621 kb on - strand, within Rru_A0073 at 85.675 kb on + strand at 85.675 kb on + strand at 85.759 kb on + strand at 86.023 kb on - strand at 86.023 kb on - strand at 86.023 kb on - strand at 86.259 kb on + strand, within Rru_A0074 at 86.259 kb on + strand, within Rru_A0074 at 86.259 kb on + strand, within Rru_A0074 at 86.259 kb on + strand, within Rru_A0074 at 86.259 kb on + strand, within Rru_A0074 at 86.331 kb on + strand, within Rru_A0074 at 86.332 kb on - strand, within Rru_A0074 at 86.332 kb on - strand, within Rru_A0074 at 86.332 kb on - strand, within Rru_A0074 at 86.427 kb on + strand, within Rru_A0074 at 86.428 kb on - strand, within Rru_A0074 at 86.448 kb on + strand, within Rru_A0074 at 86.448 kb on + strand, within Rru_A0074 at 86.449 kb on - strand, within Rru_A0074 at 86.449 kb on - strand, within Rru_A0074 at 86.597 kb on + strand, within Rru_A0074 at 86.597 kb on + strand, within Rru_A0074 at 86.598 kb on - strand, within Rru_A0074 at 86.652 kb on - strand, within Rru_A0074
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 85,072 + -0.0 85,079 - +0.8 85,151 + +1.0 85,271 + +1.8 85,271 + -0.0 85,271 + +1.5 85,272 - -0.0 85,272 - -1.0 85,403 + Rru_A0073 0.28 +0.5 85,404 - Rru_A0073 0.28 -0.0 85,438 - Rru_A0073 0.37 -0.3 85,458 + Rru_A0073 0.42 +0.0 85,458 + Rru_A0073 0.42 -0.0 85,459 - Rru_A0073 0.43 -0.0 85,621 - Rru_A0073 0.85 -1.0 85,675 + +0.7 85,675 + -1.6 85,759 + -0.0 86,023 - -0.0 86,023 - -0.0 86,023 - +0.4 86,259 + Rru_A0074 0.15 +1.6 86,259 + Rru_A0074 0.15 -0.0 86,259 + Rru_A0074 0.15 -0.0 86,259 + Rru_A0074 0.15 -0.0 86,259 + Rru_A0074 0.15 +1.0 86,331 + Rru_A0074 0.17 -0.0 86,332 - Rru_A0074 0.17 +0.5 86,332 - Rru_A0074 0.17 +1.0 86,332 - Rru_A0074 0.17 +1.1 86,427 + Rru_A0074 0.20 +0.5 86,428 - Rru_A0074 0.20 -0.0 86,448 + Rru_A0074 0.20 -0.0 86,448 + Rru_A0074 0.20 -0.0 86,449 - Rru_A0074 0.20 -0.0 86,449 - Rru_A0074 0.20 +0.5 86,597 + Rru_A0074 0.25 -0.0 86,597 + Rru_A0074 0.25 +0.2 86,598 - Rru_A0074 0.25 +0.2 86,652 - Rru_A0074 0.27 +0.7
Or see this region's nucleotide sequence