Strain Fitness in Rhodospirillum rubrum S1H around Rru_B0047

Experiment: Succinic Acid; Light intensity 9 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_B0046 and Rru_B0047 are separated by 42 nucleotidesRru_B0047 and Rru_B0048 overlap by 4 nucleotidesRru_B0048 and Rru_B0049 overlap by 4 nucleotides Rru_B0046: Rru_B0046 - Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase (NCBI), at 48,155 to 49,639 _B0046 Rru_B0047: Rru_B0047 - NAD-dependent epimerase/dehydratase (NCBI), at 49,682 to 50,716 _B0047 Rru_B0048: Rru_B0048 - Glucose-1-phosphate thymidylyltransferase, long form (NCBI), at 50,713 to 51,597 _B0048 Rru_B0049: Rru_B0049 - dTDP-4-dehydrorhamnose reductase (NCBI), at 51,594 to 52,526 _B0049 Position (kb) 49 50 51Strain fitness (log2 ratio) -1 0 1 2 3at 48.732 kb on - strand, within Rru_B0046at 48.732 kb on - strand, within Rru_B0046at 48.732 kb on - strand, within Rru_B0046at 48.732 kb on - strand, within Rru_B0046at 48.749 kb on + strand, within Rru_B0046at 48.749 kb on + strand, within Rru_B0046at 48.749 kb on + strand, within Rru_B0046at 48.749 kb on + strand, within Rru_B0046at 48.750 kb on - strand, within Rru_B0046at 48.750 kb on - strand, within Rru_B0046at 48.750 kb on - strand, within Rru_B0046at 48.750 kb on - strand, within Rru_B0046at 48.750 kb on - strand, within Rru_B0046at 48.750 kb on - strand, within Rru_B0046at 48.750 kb on - strand, within Rru_B0046at 48.791 kb on + strand, within Rru_B0046at 48.791 kb on + strand, within Rru_B0046at 48.792 kb on - strand, within Rru_B0046at 48.792 kb on - strand, within Rru_B0046at 48.792 kb on - strand, within Rru_B0046at 48.929 kb on + strand, within Rru_B0046at 48.930 kb on - strand, within Rru_B0046at 49.088 kb on + strand, within Rru_B0046at 49.088 kb on + strand, within Rru_B0046at 49.088 kb on + strand, within Rru_B0046at 49.088 kb on + strand, within Rru_B0046at 49.088 kb on + strand, within Rru_B0046at 49.088 kb on + strand, within Rru_B0046at 49.088 kb on + strand, within Rru_B0046at 49.088 kb on + strand, within Rru_B0046at 49.088 kb on + strand, within Rru_B0046at 49.088 kb on + strand, within Rru_B0046at 49.088 kb on + strand, within Rru_B0046at 49.088 kb on + strand, within Rru_B0046at 49.089 kb on - strand, within Rru_B0046at 49.089 kb on - strand, within Rru_B0046at 49.089 kb on - strand, within Rru_B0046at 49.089 kb on - strand, within Rru_B0046at 49.089 kb on - strand, within Rru_B0046at 49.089 kb on - strand, within Rru_B0046at 49.089 kb on - strand, within Rru_B0046at 49.089 kb on - strand, within Rru_B0046at 49.089 kb on - strand, within Rru_B0046at 49.089 kb on - strand, within Rru_B0046at 49.089 kb on - strand, within Rru_B0046at 49.089 kb on - strand, within Rru_B0046at 49.090 kb on + strand, within Rru_B0046at 49.090 kb on + strand, within Rru_B0046at 49.091 kb on - strand, within Rru_B0046at 49.091 kb on - strand, within Rru_B0046at 49.091 kb on - strand, within Rru_B0046at 49.255 kb on + strand, within Rru_B0046at 49.255 kb on + strand, within Rru_B0046at 49.255 kb on + strand, within Rru_B0046at 49.255 kb on + strand, within Rru_B0046at 49.256 kb on - strand, within Rru_B0046at 49.256 kb on - strand, within Rru_B0046at 49.256 kb on - strand, within Rru_B0046at 49.281 kb on - strand, within Rru_B0046at 49.281 kb on - strand, within Rru_B0046at 49.410 kb on + strand, within Rru_B0046at 49.411 kb on - strand, within Rru_B0046at 49.411 kb on - strand, within Rru_B0046at 49.457 kb on + strand, within Rru_B0046at 49.457 kb on + strand, within Rru_B0046at 49.457 kb on + strand, within Rru_B0046at 49.457 kb on + strand, within Rru_B0046at 49.457 kb on + strand, within Rru_B0046at 49.457 kb on + strand, within Rru_B0046at 49.457 kb on + strand, within Rru_B0046at 49.457 kb on + strand, within Rru_B0046at 49.458 kb on - strand, within Rru_B0046at 49.458 kb on - strand, within Rru_B0046at 49.458 kb on - strand, within Rru_B0046at 49.458 kb on - strand, within Rru_B0046at 49.459 kb on + strand, within Rru_B0046at 49.460 kb on - strand, within Rru_B0046at 49.460 kb on - strand, within Rru_B0046at 49.613 kb on - strandat 49.681 kb on + strandat 49.681 kb on + strandat 49.699 kb on + strandat 49.700 kb on - strandat 49.730 kb on + strandat 49.801 kb on + strand, within Rru_B0047at 49.803 kb on + strand, within Rru_B0047at 49.880 kb on + strand, within Rru_B0047at 50.045 kb on + strand, within Rru_B0047at 50.045 kb on + strand, within Rru_B0047at 50.046 kb on - strand, within Rru_B0047at 50.114 kb on + strand, within Rru_B0047at 50.145 kb on + strand, within Rru_B0047at 50.145 kb on + strand, within Rru_B0047at 50.145 kb on + strand, within Rru_B0047at 50.146 kb on - strand, within Rru_B0047at 50.146 kb on - strand, within Rru_B0047at 50.146 kb on - strand, within Rru_B0047at 50.147 kb on + strand, within Rru_B0047at 50.147 kb on + strand, within Rru_B0047at 50.147 kb on + strand, within Rru_B0047at 50.147 kb on + strand, within Rru_B0047at 50.147 kb on + strand, within Rru_B0047at 50.148 kb on - strand, within Rru_B0047at 50.171 kb on + strand, within Rru_B0047at 50.172 kb on - strand, within Rru_B0047at 50.357 kb on + strand, within Rru_B0047at 50.357 kb on + strand, within Rru_B0047at 50.358 kb on - strand, within Rru_B0047at 50.358 kb on - strand, within Rru_B0047at 50.406 kb on - strand, within Rru_B0047at 50.406 kb on - strand, within Rru_B0047at 50.407 kb on + strand, within Rru_B0047at 50.407 kb on + strand, within Rru_B0047

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
remove
48,732 - Rru_B0046 0.39 +0.7
48,732 - Rru_B0046 0.39 +0.6
48,732 - Rru_B0046 0.39 +0.8
48,732 - Rru_B0046 0.39 +1.9
48,749 + Rru_B0046 0.40 +2.1
48,749 + Rru_B0046 0.40 +0.6
48,749 + Rru_B0046 0.40 +0.6
48,749 + Rru_B0046 0.40 +1.6
48,750 - Rru_B0046 0.40 +1.7
48,750 - Rru_B0046 0.40 +0.6
48,750 - Rru_B0046 0.40 +1.3
48,750 - Rru_B0046 0.40 +1.2
48,750 - Rru_B0046 0.40 +0.6
48,750 - Rru_B0046 0.40 +0.6
48,750 - Rru_B0046 0.40 +1.8
48,791 + Rru_B0046 0.43 +1.7
48,791 + Rru_B0046 0.43 +0.6
48,792 - Rru_B0046 0.43 +0.6
48,792 - Rru_B0046 0.43 +1.5
48,792 - Rru_B0046 0.43 +1.6
48,929 + Rru_B0046 0.52 +1.3
48,930 - Rru_B0046 0.52 +0.6
49,088 + Rru_B0046 0.63 +1.7
49,088 + Rru_B0046 0.63 +2.2
49,088 + Rru_B0046 0.63 +1.1
49,088 + Rru_B0046 0.63 +1.2
49,088 + Rru_B0046 0.63 +0.6
49,088 + Rru_B0046 0.63 +0.6
49,088 + Rru_B0046 0.63 +0.6
49,088 + Rru_B0046 0.63 +1.3
49,088 + Rru_B0046 0.63 +0.6
49,088 + Rru_B0046 0.63 +2.8
49,088 + Rru_B0046 0.63 +0.6
49,088 + Rru_B0046 0.63 +0.4
49,089 - Rru_B0046 0.63 +0.6
49,089 - Rru_B0046 0.63 +2.6
49,089 - Rru_B0046 0.63 +0.6
49,089 - Rru_B0046 0.63 +1.4
49,089 - Rru_B0046 0.63 +0.6
49,089 - Rru_B0046 0.63 +0.6
49,089 - Rru_B0046 0.63 +1.5
49,089 - Rru_B0046 0.63 -0.4
49,089 - Rru_B0046 0.63 +0.6
49,089 - Rru_B0046 0.63 +1.2
49,089 - Rru_B0046 0.63 +2.0
49,089 - Rru_B0046 0.63 +0.6
49,090 + Rru_B0046 0.63 +0.7
49,090 + Rru_B0046 0.63 +1.4
49,091 - Rru_B0046 0.63 +1.3
49,091 - Rru_B0046 0.63 +1.3
49,091 - Rru_B0046 0.63 +0.6
49,255 + Rru_B0046 0.74 +0.6
49,255 + Rru_B0046 0.74 +0.4
49,255 + Rru_B0046 0.74 +1.3
49,255 + Rru_B0046 0.74 +0.3
49,256 - Rru_B0046 0.74 +0.7
49,256 - Rru_B0046 0.74 +1.3
49,256 - Rru_B0046 0.74 +1.4
49,281 - Rru_B0046 0.76 +0.7
49,281 - Rru_B0046 0.76 +0.6
49,410 + Rru_B0046 0.85 +0.6
49,411 - Rru_B0046 0.85 +1.1
49,411 - Rru_B0046 0.85 +1.4
49,457 + Rru_B0046 0.88 -0.1
49,457 + Rru_B0046 0.88 +1.2
49,457 + Rru_B0046 0.88 +0.6
49,457 + Rru_B0046 0.88 +0.6
49,457 + Rru_B0046 0.88 +0.6
49,457 + Rru_B0046 0.88 +1.4
49,457 + Rru_B0046 0.88 +0.9
49,457 + Rru_B0046 0.88 +0.6
49,458 - Rru_B0046 0.88 +0.6
49,458 - Rru_B0046 0.88 +2.2
49,458 - Rru_B0046 0.88 +1.4
49,458 - Rru_B0046 0.88 +0.6
49,459 + Rru_B0046 0.88 +2.0
49,460 - Rru_B0046 0.88 +0.6
49,460 - Rru_B0046 0.88 -1.4
49,613 - +0.6
49,681 + +0.6
49,681 + +0.2
49,699 + +0.6
49,700 - +0.6
49,730 + +0.6
49,801 + Rru_B0047 0.11 +1.1
49,803 + Rru_B0047 0.12 -0.4
49,880 + Rru_B0047 0.19 +0.4
50,045 + Rru_B0047 0.35 +0.6
50,045 + Rru_B0047 0.35 +0.7
50,046 - Rru_B0047 0.35 +2.8
50,114 + Rru_B0047 0.42 +0.6
50,145 + Rru_B0047 0.45 +0.5
50,145 + Rru_B0047 0.45 +2.2
50,145 + Rru_B0047 0.45 +1.2
50,146 - Rru_B0047 0.45 +1.2
50,146 - Rru_B0047 0.45 +1.4
50,146 - Rru_B0047 0.45 +0.9
50,147 + Rru_B0047 0.45 +0.6
50,147 + Rru_B0047 0.45 +0.6
50,147 + Rru_B0047 0.45 +0.6
50,147 + Rru_B0047 0.45 +1.1
50,147 + Rru_B0047 0.45 +1.8
50,148 - Rru_B0047 0.45 +1.3
50,171 + Rru_B0047 0.47 +0.6
50,172 - Rru_B0047 0.47 +1.0
50,357 + Rru_B0047 0.65 +0.6
50,357 + Rru_B0047 0.65 +1.1
50,358 - Rru_B0047 0.65 +0.6
50,358 - Rru_B0047 0.65 +0.6
50,406 - Rru_B0047 0.70 -0.9
50,406 - Rru_B0047 0.70 +1.1
50,407 + Rru_B0047 0.70 +0.6
50,407 + Rru_B0047 0.70 +0.6

Or see this region's nucleotide sequence