Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_B0041 and Rru_B0042 are separated by 34 nucleotides Rru_B0042 and Rru_B0043 are separated by 103 nucleotides Rru_B0043 and Rru_B0044 are separated by 59 nucleotides
Rru_B0041: Rru_B0041 - Transcriptional Regulator, XRE family (NCBI), at 42,399 to 42,710
_B0041
Rru_B0042: Rru_B0042 - hypothetical protein (NCBI), at 42,745 to 43,599
_B0042
Rru_B0043: Rru_B0043 - hypothetical protein (NCBI), at 43,703 to 44,356
_B0043
Rru_B0044: Rru_B0044 - Glycosyl transferase, family 2 (NCBI), at 44,416 to 46,656
_B0044
Position (kb) 43
44
45 Strain fitness (log2 ratio) -1
0
1
2
3 at 42.708 kb on + strand at 42.709 kb on - strand at 42.709 kb on - strand at 42.727 kb on + strand at 42.727 kb on + strand at 42.727 kb on + strand at 42.727 kb on + strand at 42.727 kb on + strand at 42.727 kb on + strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.838 kb on + strand, within Rru_B0042 at 42.839 kb on - strand, within Rru_B0042 at 42.839 kb on - strand, within Rru_B0042 at 42.839 kb on - strand, within Rru_B0042 at 42.928 kb on + strand, within Rru_B0042 at 42.928 kb on + strand, within Rru_B0042 at 42.928 kb on + strand, within Rru_B0042 at 42.928 kb on + strand, within Rru_B0042 at 42.928 kb on + strand, within Rru_B0042 at 42.928 kb on + strand, within Rru_B0042 at 42.929 kb on - strand, within Rru_B0042 at 42.929 kb on - strand, within Rru_B0042 at 42.929 kb on - strand, within Rru_B0042 at 42.929 kb on - strand, within Rru_B0042 at 43.409 kb on + strand, within Rru_B0042 at 43.409 kb on + strand, within Rru_B0042 at 43.409 kb on + strand, within Rru_B0042 at 43.410 kb on - strand, within Rru_B0042 at 43.541 kb on + strand at 43.542 kb on - strand at 43.817 kb on - strand, within Rru_B0043 at 44.035 kb on + strand, within Rru_B0043 at 44.036 kb on - strand, within Rru_B0043 at 44.036 kb on - strand, within Rru_B0043 at 44.036 kb on - strand, within Rru_B0043 at 44.109 kb on + strand, within Rru_B0043 at 44.165 kb on + strand, within Rru_B0043 at 44.166 kb on - strand, within Rru_B0043 at 44.166 kb on - strand, within Rru_B0043 at 44.166 kb on - strand, within Rru_B0043 at 44.166 kb on - strand, within Rru_B0043 at 44.166 kb on - strand, within Rru_B0043 at 44.166 kb on - strand, within Rru_B0043 at 44.311 kb on + strand at 44.311 kb on + strand at 44.312 kb on - strand at 44.312 kb on - strand at 44.312 kb on - strand at 44.312 kb on - strand at 44.354 kb on + strand at 44.355 kb on - strand at 44.355 kb on - strand at 44.474 kb on - strand at 44.474 kb on - strand at 44.768 kb on - strand, within Rru_B0044
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 42,708 + +0.8 42,709 - +0.6 42,709 - +1.4 42,727 + +0.6 42,727 + +0.6 42,727 + +0.6 42,727 + +0.6 42,727 + +0.6 42,727 + +0.6 42,728 - +0.6 42,728 - +1.7 42,728 - +1.5 42,728 - +0.6 42,728 - +0.6 42,728 - -0.4 42,728 - +0.6 42,728 - +1.7 42,728 - +0.1 42,728 - +1.4 42,728 - -0.4 42,728 - +0.6 42,728 - +0.6 42,838 + Rru_B0042 0.11 +1.2 42,839 - Rru_B0042 0.11 +0.6 42,839 - Rru_B0042 0.11 +1.8 42,839 - Rru_B0042 0.11 +0.6 42,928 + Rru_B0042 0.21 +1.8 42,928 + Rru_B0042 0.21 +1.2 42,928 + Rru_B0042 0.21 +1.2 42,928 + Rru_B0042 0.21 +0.3 42,928 + Rru_B0042 0.21 +1.9 42,928 + Rru_B0042 0.21 -0.4 42,929 - Rru_B0042 0.22 +0.2 42,929 - Rru_B0042 0.22 -0.4 42,929 - Rru_B0042 0.22 +0.9 42,929 - Rru_B0042 0.22 +0.9 43,409 + Rru_B0042 0.78 +1.4 43,409 + Rru_B0042 0.78 +0.6 43,409 + Rru_B0042 0.78 +0.6 43,410 - Rru_B0042 0.78 +0.6 43,541 + +1.0 43,542 - +1.8 43,817 - Rru_B0043 0.17 +0.6 44,035 + Rru_B0043 0.51 +1.5 44,036 - Rru_B0043 0.51 +0.6 44,036 - Rru_B0043 0.51 -0.4 44,036 - Rru_B0043 0.51 -0.4 44,109 + Rru_B0043 0.62 -0.4 44,165 + Rru_B0043 0.71 +2.0 44,166 - Rru_B0043 0.71 +0.6 44,166 - Rru_B0043 0.71 +0.6 44,166 - Rru_B0043 0.71 +1.7 44,166 - Rru_B0043 0.71 +0.6 44,166 - Rru_B0043 0.71 +0.8 44,166 - Rru_B0043 0.71 +3.0 44,311 + +2.1 44,311 + +0.6 44,312 - +0.5 44,312 - +1.1 44,312 - +0.6 44,312 - +0.6 44,354 + +0.9 44,355 - +0.6 44,355 - +1.3 44,474 - +0.6 44,474 - +0.6 44,768 - Rru_B0044 0.16 +0.6
Or see this region's nucleotide sequence