Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_4214

Experiment: D-Glucose (C); no added vitamins

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_4213 and Ga0059261_4214 are separated by 184 nucleotidesGa0059261_4214 and Ga0059261_4215 overlap by 4 nucleotidesGa0059261_4215 and Ga0059261_4216 are separated by 11 nucleotides Ga0059261_4213: Ga0059261_4213 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148), at 4,367,928 to 4,368,779 _4213 Ga0059261_4214: Ga0059261_4214 - Enoyl-CoA hydratase/carnithine racemase, at 4,368,964 to 4,369,692 _4214 Ga0059261_4215: Ga0059261_4215 - Predicted N-formylglutamate amidohydrolase, at 4,369,689 to 4,370,420 _4215 Ga0059261_4216: Ga0059261_4216 - Dihydroxyacid dehydratase/phosphogluconate dehydratase, at 4,370,432 to 4,372,153 _4216 Position (kb) 4368 4369 4370Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 4368.812 kb on + strandat 4368.812 kb on + strandat 4368.813 kb on - strandat 4368.815 kb on - strandat 4368.865 kb on - strandat 4368.865 kb on - strandat 4369.007 kb on + strandat 4369.007 kb on + strandat 4369.008 kb on - strandat 4369.008 kb on - strandat 4369.008 kb on - strandat 4369.008 kb on - strandat 4369.293 kb on - strand, within Ga0059261_4214at 4369.375 kb on + strand, within Ga0059261_4214at 4369.375 kb on + strand, within Ga0059261_4214at 4369.622 kb on + strandat 4369.622 kb on + strandat 4369.622 kb on + strandat 4369.622 kb on + strandat 4369.623 kb on - strandat 4369.683 kb on + strandat 4369.683 kb on + strandat 4369.706 kb on + strandat 4369.808 kb on + strand, within Ga0059261_4215at 4369.808 kb on + strand, within Ga0059261_4215at 4369.808 kb on + strand, within Ga0059261_4215at 4369.808 kb on + strand, within Ga0059261_4215at 4369.808 kb on + strand, within Ga0059261_4215at 4369.808 kb on + strand, within Ga0059261_4215at 4369.809 kb on - strand, within Ga0059261_4215at 4369.809 kb on - strand, within Ga0059261_4215at 4370.022 kb on + strand, within Ga0059261_4215at 4370.022 kb on + strand, within Ga0059261_4215at 4370.148 kb on + strand, within Ga0059261_4215at 4370.148 kb on + strand, within Ga0059261_4215at 4370.149 kb on - strand, within Ga0059261_4215at 4370.149 kb on - strand, within Ga0059261_4215at 4370.229 kb on + strand, within Ga0059261_4215at 4370.283 kb on - strand, within Ga0059261_4215at 4370.290 kb on - strand, within Ga0059261_4215at 4370.368 kb on + strandat 4370.369 kb on - strandat 4370.418 kb on + strandat 4370.418 kb on + strandat 4370.419 kb on - strandat 4370.419 kb on - strandat 4370.510 kb on + strandat 4370.510 kb on + strandat 4370.510 kb on + strandat 4370.510 kb on + strandat 4370.510 kb on + strandat 4370.510 kb on + strandat 4370.510 kb on + strandat 4370.510 kb on + strandat 4370.510 kb on + strandat 4370.511 kb on - strandat 4370.511 kb on - strandat 4370.511 kb on - strandat 4370.511 kb on - strandat 4370.511 kb on - strandat 4370.511 kb on - strandat 4370.511 kb on - strandat 4370.511 kb on - strandat 4370.511 kb on - strandat 4370.511 kb on - strandat 4370.511 kb on - strandat 4370.513 kb on + strandat 4370.513 kb on + strandat 4370.513 kb on + strandat 4370.513 kb on + strandat 4370.513 kb on + strandat 4370.514 kb on - strandat 4370.514 kb on - strandat 4370.514 kb on - strandat 4370.514 kb on - strandat 4370.514 kb on - strandat 4370.516 kb on + strandat 4370.516 kb on + strandat 4370.516 kb on + strandat 4370.516 kb on + strandat 4370.516 kb on + strandat 4370.516 kb on + strandat 4370.516 kb on + strandat 4370.517 kb on - strandat 4370.517 kb on - strandat 4370.517 kb on - strandat 4370.517 kb on - strandat 4370.517 kb on - strandat 4370.517 kb on - strandat 4370.517 kb on - strandat 4370.517 kb on - strandat 4370.517 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); no added vitamins
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4,368,812 + +0.9
4,368,812 + -0.1
4,368,813 - +0.5
4,368,815 - +1.2
4,368,865 - +0.9
4,368,865 - -0.2
4,369,007 + +1.4
4,369,007 + -0.3
4,369,008 - +0.0
4,369,008 - +0.5
4,369,008 - +0.0
4,369,008 - +1.7
4,369,293 - Ga0059261_4214 0.45 +1.4
4,369,375 + Ga0059261_4214 0.56 +0.3
4,369,375 + Ga0059261_4214 0.56 +0.2
4,369,622 + -1.1
4,369,622 + +0.8
4,369,622 + +0.7
4,369,622 + -2.3
4,369,623 - +2.4
4,369,683 + +0.2
4,369,683 + +0.7
4,369,706 + +0.1
4,369,808 + Ga0059261_4215 0.16 +1.1
4,369,808 + Ga0059261_4215 0.16 +0.3
4,369,808 + Ga0059261_4215 0.16 -4.3
4,369,808 + Ga0059261_4215 0.16 +1.6
4,369,808 + Ga0059261_4215 0.16 +1.1
4,369,808 + Ga0059261_4215 0.16 +0.8
4,369,809 - Ga0059261_4215 0.16 +0.2
4,369,809 - Ga0059261_4215 0.16 -0.3
4,370,022 + Ga0059261_4215 0.45 +1.5
4,370,022 + Ga0059261_4215 0.45 +0.4
4,370,148 + Ga0059261_4215 0.63 -0.8
4,370,148 + Ga0059261_4215 0.63 -2.4
4,370,149 - Ga0059261_4215 0.63 +0.4
4,370,149 - Ga0059261_4215 0.63 +1.2
4,370,229 + Ga0059261_4215 0.74 -2.3
4,370,283 - Ga0059261_4215 0.81 +1.1
4,370,290 - Ga0059261_4215 0.82 +1.2
4,370,368 + -1.2
4,370,369 - +0.2
4,370,418 + -1.5
4,370,418 + -4.1
4,370,419 - -3.5
4,370,419 - -3.8
4,370,510 + -4.9
4,370,510 + -3.1
4,370,510 + -1.0
4,370,510 + -4.8
4,370,510 + -4.4
4,370,510 + -5.0
4,370,510 + +0.2
4,370,510 + -5.8
4,370,510 + -2.7
4,370,511 - -2.0
4,370,511 - -3.7
4,370,511 - -3.4
4,370,511 - -3.6
4,370,511 - -3.6
4,370,511 - -1.5
4,370,511 - -4.6
4,370,511 - -3.5
4,370,511 - -3.9
4,370,511 - -1.2
4,370,511 - -4.2
4,370,513 + -4.1
4,370,513 + -3.4
4,370,513 + -1.8
4,370,513 + -0.6
4,370,513 + -4.8
4,370,514 - +0.2
4,370,514 - -0.8
4,370,514 - -4.4
4,370,514 - -0.2
4,370,514 - -3.6
4,370,516 + -1.7
4,370,516 + -3.6
4,370,516 + -2.5
4,370,516 + -3.4
4,370,516 + -4.0
4,370,516 + -4.6
4,370,516 + -2.1
4,370,517 - -4.3
4,370,517 - -1.6
4,370,517 - -2.8
4,370,517 - -3.0
4,370,517 - -2.3
4,370,517 - -5.3
4,370,517 - -2.2
4,370,517 - -3.2
4,370,517 - -4.9

Or see this region's nucleotide sequence