Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2324

Experiment: D-Glucose (C); no added vitamins

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_2323 and Ga0059261_2324 are separated by 98 nucleotidesGa0059261_2324 and Ga0059261_2325 are separated by 1 nucleotidesGa0059261_2325 and Ga0059261_2326 are separated by 3 nucleotidesGa0059261_2326 and Ga0059261_2327 overlap by 1 nucleotides Ga0059261_2323: Ga0059261_2323 - 3-oxoacyl-(acyl-carrier-protein) synthase III, at 2,434,304 to 2,435,284 _2323 Ga0059261_2324: Ga0059261_2324 - integration host factor, alpha subunit, at 2,435,383 to 2,435,682 _2324 Ga0059261_2325: Ga0059261_2325 - MerR HTH family regulatory protein, at 2,435,684 to 2,436,034 _2325 Ga0059261_2326: Ga0059261_2326 - Phosphohistidine phosphatase SixA, at 2,436,038 to 2,436,580 _2326 Ga0059261_2327: Ga0059261_2327 - Rad3-related DNA helicases, at 2,436,580 to 2,439,297 _2327 Position (kb) 2435 2436Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 2435.314 kb on + strandat 2435.320 kb on - strandat 2435.320 kb on - strandat 2435.350 kb on + strandat 2435.350 kb on + strandat 2435.350 kb on + strandat 2435.351 kb on - strandat 2435.351 kb on - strandat 2435.351 kb on - strandat 2435.351 kb on - strandat 2435.493 kb on + strand, within Ga0059261_2324at 2435.493 kb on + strand, within Ga0059261_2324at 2435.493 kb on + strand, within Ga0059261_2324at 2435.493 kb on + strand, within Ga0059261_2324at 2435.493 kb on + strand, within Ga0059261_2324at 2435.493 kb on + strand, within Ga0059261_2324at 2435.493 kb on + strand, within Ga0059261_2324at 2435.493 kb on + strand, within Ga0059261_2324at 2435.493 kb on + strand, within Ga0059261_2324at 2435.493 kb on + strand, within Ga0059261_2324at 2435.493 kb on + strand, within Ga0059261_2324at 2435.494 kb on - strand, within Ga0059261_2324at 2435.494 kb on - strand, within Ga0059261_2324at 2435.494 kb on - strand, within Ga0059261_2324at 2435.494 kb on - strand, within Ga0059261_2324at 2435.790 kb on - strand, within Ga0059261_2325at 2435.790 kb on - strand, within Ga0059261_2325at 2435.846 kb on + strand, within Ga0059261_2325at 2435.846 kb on + strand, within Ga0059261_2325at 2435.847 kb on - strand, within Ga0059261_2325at 2435.847 kb on - strand, within Ga0059261_2325at 2435.847 kb on - strand, within Ga0059261_2325at 2435.850 kb on - strand, within Ga0059261_2325at 2435.875 kb on - strand, within Ga0059261_2325at 2435.909 kb on + strand, within Ga0059261_2325at 2435.909 kb on + strand, within Ga0059261_2325at 2435.909 kb on + strand, within Ga0059261_2325at 2435.910 kb on - strand, within Ga0059261_2325at 2435.910 kb on - strand, within Ga0059261_2325at 2436.194 kb on + strand, within Ga0059261_2326at 2436.240 kb on - strandat 2436.254 kb on - strand, within Ga0059261_2326at 2436.304 kb on + strand, within Ga0059261_2326at 2436.333 kb on + strand, within Ga0059261_2326at 2436.334 kb on - strand, within Ga0059261_2326at 2436.334 kb on - strand, within Ga0059261_2326at 2436.334 kb on - strand, within Ga0059261_2326at 2436.334 kb on - strand, within Ga0059261_2326at 2436.373 kb on - strand, within Ga0059261_2326at 2436.411 kb on - strand, within Ga0059261_2326at 2436.462 kb on + strand, within Ga0059261_2326at 2436.463 kb on - strand, within Ga0059261_2326at 2436.463 kb on - strand, within Ga0059261_2326at 2436.682 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); no added vitamins
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2,435,314 + +0.7
2,435,320 - +0.2
2,435,320 - -1.0
2,435,350 + +1.0
2,435,350 + +0.1
2,435,350 + +1.5
2,435,351 - -0.8
2,435,351 - -0.0
2,435,351 - +2.0
2,435,351 - +1.4
2,435,493 + Ga0059261_2324 0.37 +0.0
2,435,493 + Ga0059261_2324 0.37 +0.3
2,435,493 + Ga0059261_2324 0.37 -2.2
2,435,493 + Ga0059261_2324 0.37 -3.1
2,435,493 + Ga0059261_2324 0.37 +0.4
2,435,493 + Ga0059261_2324 0.37 -0.3
2,435,493 + Ga0059261_2324 0.37 -1.1
2,435,493 + Ga0059261_2324 0.37 +2.0
2,435,493 + Ga0059261_2324 0.37 -1.2
2,435,493 + Ga0059261_2324 0.37 +0.4
2,435,493 + Ga0059261_2324 0.37 -1.4
2,435,494 - Ga0059261_2324 0.37 -1.0
2,435,494 - Ga0059261_2324 0.37 -0.1
2,435,494 - Ga0059261_2324 0.37 +0.9
2,435,494 - Ga0059261_2324 0.37 -2.6
2,435,790 - Ga0059261_2325 0.30 +1.6
2,435,790 - Ga0059261_2325 0.30 +2.4
2,435,846 + Ga0059261_2325 0.46 +1.4
2,435,846 + Ga0059261_2325 0.46 +0.1
2,435,847 - Ga0059261_2325 0.46 -0.6
2,435,847 - Ga0059261_2325 0.46 +0.5
2,435,847 - Ga0059261_2325 0.46 +0.3
2,435,850 - Ga0059261_2325 0.47 -1.0
2,435,875 - Ga0059261_2325 0.54 -0.5
2,435,909 + Ga0059261_2325 0.64 -0.1
2,435,909 + Ga0059261_2325 0.64 -1.3
2,435,909 + Ga0059261_2325 0.64 +0.0
2,435,910 - Ga0059261_2325 0.64 -0.5
2,435,910 - Ga0059261_2325 0.64 +0.7
2,436,194 + Ga0059261_2326 0.29 -2.6
2,436,240 - -0.7
2,436,254 - Ga0059261_2326 0.40 -2.8
2,436,304 + Ga0059261_2326 0.49 -2.9
2,436,333 + Ga0059261_2326 0.54 -2.6
2,436,334 - Ga0059261_2326 0.55 -5.3
2,436,334 - Ga0059261_2326 0.55 -4.4
2,436,334 - Ga0059261_2326 0.55 -1.8
2,436,334 - Ga0059261_2326 0.55 -3.3
2,436,373 - Ga0059261_2326 0.62 -2.6
2,436,411 - Ga0059261_2326 0.69 -4.8
2,436,462 + Ga0059261_2326 0.78 -2.2
2,436,463 - Ga0059261_2326 0.78 -1.8
2,436,463 - Ga0059261_2326 0.78 -1.0
2,436,682 + +1.8

Or see this region's nucleotide sequence