Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0823

Experiment: D-Glucose (C); no added vitamins

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0821 and Ga0059261_0822 are separated by 2 nucleotidesGa0059261_0822 and Ga0059261_0823 are separated by 4 nucleotidesGa0059261_0823 and Ga0059261_0824 are separated by 94 nucleotidesGa0059261_0824 and Ga0059261_0825 are separated by 105 nucleotides Ga0059261_0821: Ga0059261_0821 - hypothetical protein, at 863,434 to 863,886 _0821 Ga0059261_0822: Ga0059261_0822 - Holliday junction endonuclease RuvC (EC 3.1.22.4), at 863,889 to 864,374 _0822 Ga0059261_0823: Ga0059261_0823 - hypothetical protein, at 864,379 to 864,885 _0823 Ga0059261_0824: Ga0059261_0824 - DNA-binding regulatory protein, YebC/PmpR family, at 864,980 to 865,723 _0824 Ga0059261_0825: Ga0059261_0825 - Uncharacterized conserved protein, at 865,829 to 866,155 _0825 Position (kb) 864 865Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 863.419 kb on - strandat 863.428 kb on + strandat 863.428 kb on + strandat 863.429 kb on - strandat 863.471 kb on + strandat 863.471 kb on + strandat 863.471 kb on + strandat 863.472 kb on - strandat 863.553 kb on + strand, within Ga0059261_0821at 863.648 kb on + strand, within Ga0059261_0821at 863.648 kb on + strand, within Ga0059261_0821at 863.648 kb on + strand, within Ga0059261_0821at 863.648 kb on + strand, within Ga0059261_0821at 863.648 kb on + strand, within Ga0059261_0821at 863.648 kb on + strand, within Ga0059261_0821at 863.649 kb on - strand, within Ga0059261_0821at 863.649 kb on - strand, within Ga0059261_0821at 863.649 kb on - strand, within Ga0059261_0821at 863.650 kb on + strand, within Ga0059261_0821at 863.650 kb on + strand, within Ga0059261_0821at 863.651 kb on - strand, within Ga0059261_0821at 863.651 kb on - strand, within Ga0059261_0821at 863.651 kb on - strand, within Ga0059261_0821at 863.651 kb on - strand, within Ga0059261_0821at 863.809 kb on - strand, within Ga0059261_0821at 863.809 kb on - strand, within Ga0059261_0821at 863.891 kb on - strandat 864.383 kb on + strandat 864.383 kb on + strandat 864.384 kb on - strandat 864.384 kb on - strandat 864.432 kb on + strand, within Ga0059261_0823at 864.566 kb on + strand, within Ga0059261_0823at 864.566 kb on + strand, within Ga0059261_0823at 864.566 kb on + strand, within Ga0059261_0823at 864.566 kb on + strand, within Ga0059261_0823at 864.566 kb on + strand, within Ga0059261_0823at 864.566 kb on + strand, within Ga0059261_0823at 864.566 kb on + strand, within Ga0059261_0823at 864.566 kb on + strand, within Ga0059261_0823at 864.566 kb on + strand, within Ga0059261_0823at 864.566 kb on + strand, within Ga0059261_0823at 864.566 kb on + strand, within Ga0059261_0823at 864.566 kb on + strand, within Ga0059261_0823at 864.566 kb on + strand, within Ga0059261_0823at 864.566 kb on + strand, within Ga0059261_0823at 864.566 kb on + strand, within Ga0059261_0823at 864.566 kb on + strand, within Ga0059261_0823at 864.566 kb on + strand, within Ga0059261_0823at 864.566 kb on + strand, within Ga0059261_0823at 864.566 kb on + strand, within Ga0059261_0823at 864.567 kb on - strand, within Ga0059261_0823at 864.567 kb on - strand, within Ga0059261_0823at 864.567 kb on - strand, within Ga0059261_0823at 864.567 kb on - strand, within Ga0059261_0823at 864.567 kb on - strand, within Ga0059261_0823at 864.567 kb on - strand, within Ga0059261_0823at 864.567 kb on - strandat 864.567 kb on - strand, within Ga0059261_0823at 864.567 kb on - strand, within Ga0059261_0823at 864.567 kb on - strand, within Ga0059261_0823at 864.567 kb on - strand, within Ga0059261_0823at 864.567 kb on - strand, within Ga0059261_0823at 864.567 kb on - strand, within Ga0059261_0823at 864.572 kb on + strandat 864.572 kb on + strand, within Ga0059261_0823at 864.572 kb on + strand, within Ga0059261_0823at 864.572 kb on + strand, within Ga0059261_0823at 864.573 kb on - strand, within Ga0059261_0823at 864.698 kb on + strand, within Ga0059261_0823at 864.698 kb on + strand, within Ga0059261_0823at 864.699 kb on - strand, within Ga0059261_0823at 864.699 kb on - strand, within Ga0059261_0823at 864.764 kb on + strand, within Ga0059261_0823at 864.765 kb on - strand, within Ga0059261_0823at 864.765 kb on - strand, within Ga0059261_0823at 864.765 kb on - strandat 864.765 kb on - strand, within Ga0059261_0823at 864.765 kb on - strand, within Ga0059261_0823at 864.765 kb on - strand, within Ga0059261_0823at 865.018 kb on - strandat 865.483 kb on - strand, within Ga0059261_0824at 865.759 kb on - strandat 865.759 kb on - strandat 865.788 kb on + strandat 865.803 kb on + strandat 865.803 kb on + strandat 865.804 kb on - strandat 865.822 kb on + strandat 865.822 kb on + strandat 865.823 kb on - strandat 865.823 kb on - strandat 865.823 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); no added vitamins
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863,419 - +0.1
863,428 + +2.2
863,428 + -1.4
863,429 - +0.1
863,471 + +0.1
863,471 + +0.8
863,471 + +1.5
863,472 - -2.3
863,553 + Ga0059261_0821 0.26 -2.2
863,648 + Ga0059261_0821 0.47 +0.1
863,648 + Ga0059261_0821 0.47 -1.6
863,648 + Ga0059261_0821 0.47 +1.0
863,648 + Ga0059261_0821 0.47 -0.5
863,648 + Ga0059261_0821 0.47 -2.1
863,648 + Ga0059261_0821 0.47 -0.5
863,649 - Ga0059261_0821 0.47 -0.6
863,649 - Ga0059261_0821 0.47 -1.1
863,649 - Ga0059261_0821 0.47 -1.2
863,650 + Ga0059261_0821 0.48 -0.4
863,650 + Ga0059261_0821 0.48 +1.0
863,651 - Ga0059261_0821 0.48 -0.8
863,651 - Ga0059261_0821 0.48 -2.4
863,651 - Ga0059261_0821 0.48 -0.2
863,651 - Ga0059261_0821 0.48 +0.4
863,809 - Ga0059261_0821 0.83 +0.3
863,809 - Ga0059261_0821 0.83 -0.7
863,891 - -0.1
864,383 + -0.8
864,383 + -0.0
864,384 - -0.3
864,384 - +0.5
864,432 + Ga0059261_0823 0.10 -0.0
864,566 + Ga0059261_0823 0.37 +0.7
864,566 + Ga0059261_0823 0.37 -0.6
864,566 + Ga0059261_0823 0.37 +0.9
864,566 + Ga0059261_0823 0.37 +0.5
864,566 + Ga0059261_0823 0.37 +2.6
864,566 + Ga0059261_0823 0.37 -1.0
864,566 + Ga0059261_0823 0.37 -1.4
864,566 + Ga0059261_0823 0.37 +1.6
864,566 + Ga0059261_0823 0.37 +0.9
864,566 + Ga0059261_0823 0.37 +0.5
864,566 + Ga0059261_0823 0.37 +0.6
864,566 + Ga0059261_0823 0.37 -0.7
864,566 + Ga0059261_0823 0.37 +1.4
864,566 + Ga0059261_0823 0.37 -2.1
864,566 + Ga0059261_0823 0.37 +0.2
864,566 + Ga0059261_0823 0.37 +0.5
864,566 + Ga0059261_0823 0.37 +0.3
864,566 + Ga0059261_0823 0.37 +1.4
864,566 + Ga0059261_0823 0.37 -0.1
864,567 - Ga0059261_0823 0.37 +0.2
864,567 - Ga0059261_0823 0.37 -0.6
864,567 - Ga0059261_0823 0.37 +2.3
864,567 - Ga0059261_0823 0.37 -0.8
864,567 - Ga0059261_0823 0.37 +0.7
864,567 - Ga0059261_0823 0.37 -1.3
864,567 - -1.1
864,567 - Ga0059261_0823 0.37 -1.6
864,567 - Ga0059261_0823 0.37 -0.0
864,567 - Ga0059261_0823 0.37 +1.2
864,567 - Ga0059261_0823 0.37 -2.2
864,567 - Ga0059261_0823 0.37 +0.4
864,567 - Ga0059261_0823 0.37 -2.1
864,572 + +1.8
864,572 + Ga0059261_0823 0.38 -3.4
864,572 + Ga0059261_0823 0.38 -0.1
864,572 + Ga0059261_0823 0.38 +0.3
864,573 - Ga0059261_0823 0.38 +0.8
864,698 + Ga0059261_0823 0.63 -0.1
864,698 + Ga0059261_0823 0.63 -1.1
864,699 - Ga0059261_0823 0.63 -2.8
864,699 - Ga0059261_0823 0.63 +0.3
864,764 + Ga0059261_0823 0.76 +0.1
864,765 - Ga0059261_0823 0.76 +0.7
864,765 - Ga0059261_0823 0.76 +0.5
864,765 - -2.4
864,765 - Ga0059261_0823 0.76 +0.8
864,765 - Ga0059261_0823 0.76 -1.1
864,765 - Ga0059261_0823 0.76 +0.5
865,018 - +1.4
865,483 - Ga0059261_0824 0.68 +0.8
865,759 - -0.6
865,759 - -3.6
865,788 + -2.0
865,803 + -3.1
865,803 + +0.8
865,804 - -0.1
865,822 + +0.0
865,822 + +1.1
865,823 - -0.7
865,823 - -1.0
865,823 - +0.4

Or see this region's nucleotide sequence