Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0586

Experiment: D-Glucose (C); no added vitamins

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0585 and Ga0059261_0586 are separated by 3 nucleotidesGa0059261_0586 and Ga0059261_0587 are separated by 46 nucleotides Ga0059261_0585: Ga0059261_0585 - Predicted membrane protein (DUF2306), at 615,454 to 616,299 _0585 Ga0059261_0586: Ga0059261_0586 - hypothetical protein, at 616,303 to 616,438 _0586 Ga0059261_0587: Ga0059261_0587 - Polysaccharide deacetylase, at 616,485 to 617,579 _0587 Position (kb) 616 617Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 615.376 kb on + strandat 615.376 kb on + strandat 615.376 kb on + strandat 615.377 kb on - strandat 615.410 kb on + strandat 615.411 kb on - strandat 615.545 kb on + strand, within Ga0059261_0585at 615.546 kb on - strand, within Ga0059261_0585at 615.546 kb on - strand, within Ga0059261_0585at 615.546 kb on - strand, within Ga0059261_0585at 615.658 kb on + strand, within Ga0059261_0585at 615.659 kb on - strand, within Ga0059261_0585at 615.766 kb on + strand, within Ga0059261_0585at 615.766 kb on + strand, within Ga0059261_0585at 615.766 kb on + strand, within Ga0059261_0585at 615.767 kb on - strand, within Ga0059261_0585at 615.767 kb on - strand, within Ga0059261_0585at 615.767 kb on - strand, within Ga0059261_0585at 615.767 kb on - strand, within Ga0059261_0585at 615.767 kb on - strand, within Ga0059261_0585at 615.902 kb on - strand, within Ga0059261_0585at 615.919 kb on - strand, within Ga0059261_0585at 615.919 kb on - strand, within Ga0059261_0585at 615.919 kb on - strand, within Ga0059261_0585at 616.033 kb on + strand, within Ga0059261_0585at 616.033 kb on + strand, within Ga0059261_0585at 616.034 kb on - strand, within Ga0059261_0585at 616.128 kb on + strand, within Ga0059261_0585at 616.247 kb on + strandat 616.247 kb on + strandat 616.248 kb on - strandat 616.254 kb on + strandat 616.298 kb on - strandat 616.333 kb on + strand, within Ga0059261_0586at 616.334 kb on - strand, within Ga0059261_0586at 616.359 kb on + strand, within Ga0059261_0586at 616.359 kb on + strand, within Ga0059261_0586at 616.359 kb on + strand, within Ga0059261_0586at 616.359 kb on + strand, within Ga0059261_0586at 616.359 kb on + strand, within Ga0059261_0586at 616.360 kb on - strand, within Ga0059261_0586at 616.381 kb on - strand, within Ga0059261_0586at 616.437 kb on + strandat 616.437 kb on + strandat 616.437 kb on + strandat 616.437 kb on + strandat 616.438 kb on - strandat 616.438 kb on - strandat 616.438 kb on - strandat 616.438 kb on - strandat 616.438 kb on - strandat 616.586 kb on - strandat 616.617 kb on - strand, within Ga0059261_0587at 616.666 kb on + strand, within Ga0059261_0587at 616.666 kb on + strand, within Ga0059261_0587at 616.667 kb on - strand, within Ga0059261_0587at 616.667 kb on - strandat 616.667 kb on - strandat 616.667 kb on - strand, within Ga0059261_0587at 616.843 kb on + strand, within Ga0059261_0587at 616.843 kb on + strand, within Ga0059261_0587at 616.843 kb on + strand, within Ga0059261_0587at 616.843 kb on + strand, within Ga0059261_0587at 616.844 kb on - strand, within Ga0059261_0587at 616.844 kb on - strand, within Ga0059261_0587at 616.969 kb on + strand, within Ga0059261_0587at 616.969 kb on + strand, within Ga0059261_0587at 616.969 kb on + strand, within Ga0059261_0587at 616.969 kb on + strand, within Ga0059261_0587at 616.970 kb on - strand, within Ga0059261_0587at 616.970 kb on - strand, within Ga0059261_0587at 616.970 kb on - strand, within Ga0059261_0587at 617.096 kb on + strand, within Ga0059261_0587at 617.096 kb on + strand, within Ga0059261_0587at 617.096 kb on + strand, within Ga0059261_0587at 617.096 kb on + strand, within Ga0059261_0587at 617.096 kb on + strand, within Ga0059261_0587at 617.097 kb on - strand, within Ga0059261_0587at 617.097 kb on - strand, within Ga0059261_0587at 617.097 kb on - strand, within Ga0059261_0587at 617.097 kb on - strand, within Ga0059261_0587at 617.098 kb on + strand, within Ga0059261_0587at 617.098 kb on + strand, within Ga0059261_0587at 617.098 kb on + strand, within Ga0059261_0587at 617.098 kb on + strand, within Ga0059261_0587at 617.098 kb on + strand, within Ga0059261_0587at 617.098 kb on + strand, within Ga0059261_0587at 617.098 kb on + strand, within Ga0059261_0587at 617.098 kb on + strand, within Ga0059261_0587at 617.098 kb on + strand, within Ga0059261_0587at 617.099 kb on - strand, within Ga0059261_0587at 617.099 kb on - strand, within Ga0059261_0587at 617.099 kb on - strand, within Ga0059261_0587at 617.099 kb on - strand, within Ga0059261_0587at 617.099 kb on - strand, within Ga0059261_0587at 617.099 kb on - strand, within Ga0059261_0587at 617.099 kb on - strand, within Ga0059261_0587at 617.099 kb on - strand, within Ga0059261_0587at 617.101 kb on + strand, within Ga0059261_0587at 617.101 kb on + strand, within Ga0059261_0587at 617.101 kb on + strand, within Ga0059261_0587at 617.101 kb on + strand, within Ga0059261_0587at 617.101 kb on + strand, within Ga0059261_0587at 617.101 kb on + strand, within Ga0059261_0587at 617.101 kb on + strand, within Ga0059261_0587at 617.101 kb on + strand, within Ga0059261_0587at 617.102 kb on - strand, within Ga0059261_0587at 617.102 kb on - strand, within Ga0059261_0587at 617.102 kb on - strand, within Ga0059261_0587at 617.225 kb on - strand, within Ga0059261_0587at 617.225 kb on - strand, within Ga0059261_0587at 617.248 kb on + strand, within Ga0059261_0587at 617.248 kb on + strand, within Ga0059261_0587at 617.249 kb on - strand, within Ga0059261_0587at 617.249 kb on - strand, within Ga0059261_0587at 617.341 kb on + strand, within Ga0059261_0587at 617.342 kb on - strand, within Ga0059261_0587

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); no added vitamins
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615,376 + +0.9
615,376 + -3.5
615,376 + +1.0
615,377 - -0.2
615,410 + -1.6
615,411 - +2.5
615,545 + Ga0059261_0585 0.11 -0.7
615,546 - Ga0059261_0585 0.11 -0.6
615,546 - Ga0059261_0585 0.11 +0.1
615,546 - Ga0059261_0585 0.11 -0.1
615,658 + Ga0059261_0585 0.24 -1.1
615,659 - Ga0059261_0585 0.24 -2.5
615,766 + Ga0059261_0585 0.37 +0.5
615,766 + Ga0059261_0585 0.37 -0.2
615,766 + Ga0059261_0585 0.37 -0.6
615,767 - Ga0059261_0585 0.37 -4.3
615,767 - Ga0059261_0585 0.37 -0.2
615,767 - Ga0059261_0585 0.37 +0.5
615,767 - Ga0059261_0585 0.37 -0.5
615,767 - Ga0059261_0585 0.37 +0.1
615,902 - Ga0059261_0585 0.53 -0.7
615,919 - Ga0059261_0585 0.55 +0.4
615,919 - Ga0059261_0585 0.55 +1.2
615,919 - Ga0059261_0585 0.55 -2.1
616,033 + Ga0059261_0585 0.68 -3.1
616,033 + Ga0059261_0585 0.68 +1.2
616,034 - Ga0059261_0585 0.69 -0.2
616,128 + Ga0059261_0585 0.80 +0.3
616,247 + +0.8
616,247 + +0.6
616,248 - -0.0
616,254 + +0.1
616,298 - -0.6
616,333 + Ga0059261_0586 0.22 -1.3
616,334 - Ga0059261_0586 0.23 +1.7
616,359 + Ga0059261_0586 0.41 +1.6
616,359 + Ga0059261_0586 0.41 -1.8
616,359 + Ga0059261_0586 0.41 -2.1
616,359 + Ga0059261_0586 0.41 -2.4
616,359 + Ga0059261_0586 0.41 -0.9
616,360 - Ga0059261_0586 0.42 +1.0
616,381 - Ga0059261_0586 0.57 -0.2
616,437 + +0.5
616,437 + -0.4
616,437 + +1.8
616,437 + -2.1
616,438 - -1.8
616,438 - +0.6
616,438 - -2.5
616,438 - +0.1
616,438 - +1.4
616,586 - +1.8
616,617 - Ga0059261_0587 0.12 +0.5
616,666 + Ga0059261_0587 0.17 +0.9
616,666 + Ga0059261_0587 0.17 -0.1
616,667 - Ga0059261_0587 0.17 -0.3
616,667 - -2.0
616,667 - +1.7
616,667 - Ga0059261_0587 0.17 +0.5
616,843 + Ga0059261_0587 0.33 -0.6
616,843 + Ga0059261_0587 0.33 +1.1
616,843 + Ga0059261_0587 0.33 -0.2
616,843 + Ga0059261_0587 0.33 +0.5
616,844 - Ga0059261_0587 0.33 -0.5
616,844 - Ga0059261_0587 0.33 +1.0
616,969 + Ga0059261_0587 0.44 -0.5
616,969 + Ga0059261_0587 0.44 +2.5
616,969 + Ga0059261_0587 0.44 -0.2
616,969 + Ga0059261_0587 0.44 +0.1
616,970 - Ga0059261_0587 0.44 -2.7
616,970 - Ga0059261_0587 0.44 +0.4
616,970 - Ga0059261_0587 0.44 +0.2
617,096 + Ga0059261_0587 0.56 -1.3
617,096 + Ga0059261_0587 0.56 +0.1
617,096 + Ga0059261_0587 0.56 +0.5
617,096 + Ga0059261_0587 0.56 +0.4
617,096 + Ga0059261_0587 0.56 +0.0
617,097 - Ga0059261_0587 0.56 +0.4
617,097 - Ga0059261_0587 0.56 +0.1
617,097 - Ga0059261_0587 0.56 -0.1
617,097 - Ga0059261_0587 0.56 +0.7
617,098 + Ga0059261_0587 0.56 -0.3
617,098 + Ga0059261_0587 0.56 +0.9
617,098 + Ga0059261_0587 0.56 +1.1
617,098 + Ga0059261_0587 0.56 +0.7
617,098 + Ga0059261_0587 0.56 +0.3
617,098 + Ga0059261_0587 0.56 +0.4
617,098 + Ga0059261_0587 0.56 -0.4
617,098 + Ga0059261_0587 0.56 +1.0
617,098 + Ga0059261_0587 0.56 -0.9
617,099 - Ga0059261_0587 0.56 -1.0
617,099 - Ga0059261_0587 0.56 +0.4
617,099 - Ga0059261_0587 0.56 +0.2
617,099 - Ga0059261_0587 0.56 +0.2
617,099 - Ga0059261_0587 0.56 +0.6
617,099 - Ga0059261_0587 0.56 +1.3
617,099 - Ga0059261_0587 0.56 +0.3
617,099 - Ga0059261_0587 0.56 +0.4
617,101 + Ga0059261_0587 0.56 +0.4
617,101 + Ga0059261_0587 0.56 -0.2
617,101 + Ga0059261_0587 0.56 -3.3
617,101 + Ga0059261_0587 0.56 +0.4
617,101 + Ga0059261_0587 0.56 +1.6
617,101 + Ga0059261_0587 0.56 +0.3
617,101 + Ga0059261_0587 0.56 +1.1
617,101 + Ga0059261_0587 0.56 +0.7
617,102 - Ga0059261_0587 0.56 -1.8
617,102 - Ga0059261_0587 0.56 +1.5
617,102 - Ga0059261_0587 0.56 +0.5
617,225 - Ga0059261_0587 0.68 +0.5
617,225 - Ga0059261_0587 0.68 +1.2
617,248 + Ga0059261_0587 0.70 -1.0
617,248 + Ga0059261_0587 0.70 -0.7
617,249 - Ga0059261_0587 0.70 +2.5
617,249 - Ga0059261_0587 0.70 +1.0
617,341 + Ga0059261_0587 0.78 +1.2
617,342 - Ga0059261_0587 0.78 +0.3

Or see this region's nucleotide sequence