Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17880

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17875 and BWI76_RS17880 are separated by 131 nucleotidesBWI76_RS17880 and BWI76_RS17885 are separated by 36 nucleotides BWI76_RS17875: BWI76_RS17875 - L-serine ammonia-lyase, at 3,716,475 to 3,717,839 _RS17875 BWI76_RS17880: BWI76_RS17880 - c-di-GMP phosphodiesterase, at 3,717,971 to 3,719,536 _RS17880 BWI76_RS17885: BWI76_RS17885 - hypothetical protein, at 3,719,573 to 3,721,132 _RS17885 Position (kb) 3717 3718 3719 3720Strain fitness (log2 ratio) -1 0 1at 3717.066 kb on + strand, within BWI76_RS17875at 3717.504 kb on + strand, within BWI76_RS17875at 3717.569 kb on - strand, within BWI76_RS17875at 3717.635 kb on + strand, within BWI76_RS17875at 3717.723 kb on + strandat 3717.799 kb on - strandat 3717.915 kb on - strandat 3718.082 kb on - strandat 3718.178 kb on + strand, within BWI76_RS17880at 3718.401 kb on + strand, within BWI76_RS17880at 3718.667 kb on - strand, within BWI76_RS17880at 3718.890 kb on - strand, within BWI76_RS17880at 3718.952 kb on - strand, within BWI76_RS17880at 3719.698 kb on - strandat 3719.782 kb on + strand, within BWI76_RS17885at 3719.966 kb on + strand, within BWI76_RS17885at 3720.192 kb on - strand, within BWI76_RS17885at 3720.228 kb on - strand, within BWI76_RS17885at 3720.252 kb on - strand, within BWI76_RS17885at 3720.345 kb on - strand, within BWI76_RS17885

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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3,717,066 + BWI76_RS17875 0.43 -0.5
3,717,504 + BWI76_RS17875 0.75 -0.2
3,717,569 - BWI76_RS17875 0.80 +0.3
3,717,635 + BWI76_RS17875 0.85 +0.1
3,717,723 + -0.4
3,717,799 - -0.1
3,717,915 - -0.9
3,718,082 - +0.0
3,718,178 + BWI76_RS17880 0.13 -1.1
3,718,401 + BWI76_RS17880 0.27 +0.5
3,718,667 - BWI76_RS17880 0.44 -0.7
3,718,890 - BWI76_RS17880 0.59 -0.4
3,718,952 - BWI76_RS17880 0.63 -1.2
3,719,698 - +0.4
3,719,782 + BWI76_RS17885 0.13 -0.2
3,719,966 + BWI76_RS17885 0.25 +0.7
3,720,192 - BWI76_RS17885 0.40 -0.0
3,720,228 - BWI76_RS17885 0.42 +0.1
3,720,252 - BWI76_RS17885 0.44 -0.2
3,720,345 - BWI76_RS17885 0.49 -0.7

Or see this region's nucleotide sequence