Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07570

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07560 and BWI76_RS07565 are separated by 308 nucleotidesBWI76_RS07565 and BWI76_RS07570 are separated by 24 nucleotidesBWI76_RS07570 and BWI76_RS07575 are separated by 234 nucleotides BWI76_RS07560: BWI76_RS07560 - aminotransferase regulator domain-containing protein, at 1,600,675 to 1,602,009 _RS07560 BWI76_RS07565: BWI76_RS07565 - LysE type translocator family protein, at 1,602,318 to 1,602,959 _RS07565 BWI76_RS07570: BWI76_RS07570 - GntR family transcriptional regulator with, at 1,602,984 to 1,604,450 _RS07570 BWI76_RS07575: BWI76_RS07575 - ABC transporter substrate-binding protein, at 1,604,685 to 1,605,536 _RS07575 Position (kb) 1602 1603 1604 1605Strain fitness (log2 ratio) -1 0 1 2at 1602.055 kb on + strandat 1602.233 kb on + strandat 1602.290 kb on + strandat 1602.290 kb on + strandat 1602.298 kb on - strandat 1602.298 kb on - strandat 1602.308 kb on - strandat 1602.334 kb on + strandat 1602.395 kb on + strand, within BWI76_RS07565at 1602.419 kb on + strand, within BWI76_RS07565at 1602.445 kb on - strand, within BWI76_RS07565at 1602.457 kb on + strand, within BWI76_RS07565at 1602.463 kb on + strand, within BWI76_RS07565at 1602.773 kb on + strand, within BWI76_RS07565at 1602.773 kb on + strand, within BWI76_RS07565at 1602.781 kb on - strand, within BWI76_RS07565at 1602.802 kb on - strand, within BWI76_RS07565at 1602.821 kb on - strand, within BWI76_RS07565at 1602.835 kb on + strand, within BWI76_RS07565at 1603.016 kb on + strandat 1603.158 kb on - strand, within BWI76_RS07570at 1603.162 kb on + strand, within BWI76_RS07570at 1603.275 kb on - strand, within BWI76_RS07570at 1603.376 kb on + strand, within BWI76_RS07570at 1603.400 kb on - strand, within BWI76_RS07570at 1603.631 kb on - strand, within BWI76_RS07570at 1604.095 kb on - strand, within BWI76_RS07570at 1604.144 kb on - strand, within BWI76_RS07570at 1604.216 kb on + strand, within BWI76_RS07570at 1604.224 kb on - strand, within BWI76_RS07570at 1604.238 kb on + strand, within BWI76_RS07570at 1604.290 kb on - strand, within BWI76_RS07570at 1604.339 kb on - strandat 1604.439 kb on - strandat 1604.476 kb on + strandat 1604.476 kb on + strandat 1604.484 kb on - strandat 1604.517 kb on - strandat 1604.539 kb on - strandat 1604.598 kb on + strandat 1604.598 kb on + strandat 1604.708 kb on - strandat 1604.719 kb on + strandat 1604.727 kb on - strandat 1604.727 kb on - strandat 1604.789 kb on + strand, within BWI76_RS07575at 1604.820 kb on + strand, within BWI76_RS07575at 1604.820 kb on + strand, within BWI76_RS07575at 1604.828 kb on - strand, within BWI76_RS07575at 1604.828 kb on - strand, within BWI76_RS07575at 1604.865 kb on + strand, within BWI76_RS07575at 1604.914 kb on + strand, within BWI76_RS07575at 1604.915 kb on - strand, within BWI76_RS07575at 1604.920 kb on - strand, within BWI76_RS07575at 1604.922 kb on - strand, within BWI76_RS07575at 1604.940 kb on - strand, within BWI76_RS07575at 1604.955 kb on + strand, within BWI76_RS07575at 1604.964 kb on + strand, within BWI76_RS07575at 1604.970 kb on + strand, within BWI76_RS07575at 1604.970 kb on + strand, within BWI76_RS07575at 1604.970 kb on + strand, within BWI76_RS07575at 1604.970 kb on + strand, within BWI76_RS07575at 1604.970 kb on + strand, within BWI76_RS07575at 1604.978 kb on - strand, within BWI76_RS07575at 1604.978 kb on - strand, within BWI76_RS07575at 1604.978 kb on - strand, within BWI76_RS07575at 1604.978 kb on - strand, within BWI76_RS07575at 1604.978 kb on - strand, within BWI76_RS07575at 1604.978 kb on - strand, within BWI76_RS07575at 1604.978 kb on - strand, within BWI76_RS07575at 1604.999 kb on - strand, within BWI76_RS07575at 1605.001 kb on + strand, within BWI76_RS07575at 1605.002 kb on + strand, within BWI76_RS07575at 1605.009 kb on - strand, within BWI76_RS07575at 1605.066 kb on + strand, within BWI76_RS07575at 1605.074 kb on - strand, within BWI76_RS07575at 1605.088 kb on + strand, within BWI76_RS07575at 1605.088 kb on + strand, within BWI76_RS07575at 1605.091 kb on - strand, within BWI76_RS07575at 1605.217 kb on + strand, within BWI76_RS07575at 1605.225 kb on - strand, within BWI76_RS07575at 1605.227 kb on - strand, within BWI76_RS07575at 1605.229 kb on + strand, within BWI76_RS07575at 1605.293 kb on + strand, within BWI76_RS07575at 1605.299 kb on + strand, within BWI76_RS07575at 1605.312 kb on - strand, within BWI76_RS07575at 1605.332 kb on - strand, within BWI76_RS07575at 1605.391 kb on - strand, within BWI76_RS07575

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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1,602,055 + +1.5
1,602,233 + +0.9
1,602,290 + +0.2
1,602,290 + -0.0
1,602,298 - -0.3
1,602,298 - -0.8
1,602,308 - +2.2
1,602,334 + -0.1
1,602,395 + BWI76_RS07565 0.12 +1.8
1,602,419 + BWI76_RS07565 0.16 +0.1
1,602,445 - BWI76_RS07565 0.20 +1.8
1,602,457 + BWI76_RS07565 0.22 -0.1
1,602,463 + BWI76_RS07565 0.23 +1.4
1,602,773 + BWI76_RS07565 0.71 +0.1
1,602,773 + BWI76_RS07565 0.71 +0.1
1,602,781 - BWI76_RS07565 0.72 -0.7
1,602,802 - BWI76_RS07565 0.75 +0.3
1,602,821 - BWI76_RS07565 0.78 -0.5
1,602,835 + BWI76_RS07565 0.81 +0.4
1,603,016 + +1.0
1,603,158 - BWI76_RS07570 0.12 +0.3
1,603,162 + BWI76_RS07570 0.12 -0.3
1,603,275 - BWI76_RS07570 0.20 -0.2
1,603,376 + BWI76_RS07570 0.27 +0.2
1,603,400 - BWI76_RS07570 0.28 +0.2
1,603,631 - BWI76_RS07570 0.44 -0.5
1,604,095 - BWI76_RS07570 0.76 +0.3
1,604,144 - BWI76_RS07570 0.79 -0.1
1,604,216 + BWI76_RS07570 0.84 -0.1
1,604,224 - BWI76_RS07570 0.85 +0.4
1,604,238 + BWI76_RS07570 0.85 -0.8
1,604,290 - BWI76_RS07570 0.89 +1.3
1,604,339 - +0.0
1,604,439 - +0.1
1,604,476 + +1.8
1,604,476 + +0.2
1,604,484 - +0.0
1,604,517 - +0.5
1,604,539 - +0.2
1,604,598 + +0.1
1,604,598 + +0.6
1,604,708 - +0.2
1,604,719 + -0.3
1,604,727 - -0.3
1,604,727 - +0.7
1,604,789 + BWI76_RS07575 0.12 -0.5
1,604,820 + BWI76_RS07575 0.16 +0.1
1,604,820 + BWI76_RS07575 0.16 +0.0
1,604,828 - BWI76_RS07575 0.17 -0.7
1,604,828 - BWI76_RS07575 0.17 +0.2
1,604,865 + BWI76_RS07575 0.21 +0.2
1,604,914 + BWI76_RS07575 0.27 -0.4
1,604,915 - BWI76_RS07575 0.27 -0.4
1,604,920 - BWI76_RS07575 0.28 +0.4
1,604,922 - BWI76_RS07575 0.28 -0.7
1,604,940 - BWI76_RS07575 0.30 -0.7
1,604,955 + BWI76_RS07575 0.32 +1.6
1,604,964 + BWI76_RS07575 0.33 -0.7
1,604,970 + BWI76_RS07575 0.33 +0.7
1,604,970 + BWI76_RS07575 0.33 +0.5
1,604,970 + BWI76_RS07575 0.33 -0.1
1,604,970 + BWI76_RS07575 0.33 -0.3
1,604,970 + BWI76_RS07575 0.33 -0.1
1,604,978 - BWI76_RS07575 0.34 -0.4
1,604,978 - BWI76_RS07575 0.34 -0.2
1,604,978 - BWI76_RS07575 0.34 -1.0
1,604,978 - BWI76_RS07575 0.34 -0.2
1,604,978 - BWI76_RS07575 0.34 +0.2
1,604,978 - BWI76_RS07575 0.34 +0.3
1,604,978 - BWI76_RS07575 0.34 -0.5
1,604,999 - BWI76_RS07575 0.37 -0.5
1,605,001 + BWI76_RS07575 0.37 +0.2
1,605,002 + BWI76_RS07575 0.37 +0.7
1,605,009 - BWI76_RS07575 0.38 -0.6
1,605,066 + BWI76_RS07575 0.45 +0.3
1,605,074 - BWI76_RS07575 0.46 +0.4
1,605,088 + BWI76_RS07575 0.47 -0.4
1,605,088 + BWI76_RS07575 0.47 -1.2
1,605,091 - BWI76_RS07575 0.48 -0.2
1,605,217 + BWI76_RS07575 0.62 -0.1
1,605,225 - BWI76_RS07575 0.63 +1.6
1,605,227 - BWI76_RS07575 0.64 +0.5
1,605,229 + BWI76_RS07575 0.64 -0.1
1,605,293 + BWI76_RS07575 0.71 -0.4
1,605,299 + BWI76_RS07575 0.72 +0.2
1,605,312 - BWI76_RS07575 0.74 -0.8
1,605,332 - BWI76_RS07575 0.76 -0.5
1,605,391 - BWI76_RS07575 0.83 -0.1

Or see this region's nucleotide sequence