Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22680

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22675 and BPHYT_RS22680 are separated by 318 nucleotidesBPHYT_RS22680 and BPHYT_RS22685 overlap by 4 nucleotidesBPHYT_RS22685 and BPHYT_RS22690 are separated by 49 nucleotides BPHYT_RS22675: BPHYT_RS22675 - 4-hydroxyphenylpyruvate dioxygenase, at 642,301 to 644,184 _RS22675 BPHYT_RS22680: BPHYT_RS22680 - 3-dehydroquinate dehydratase, at 644,503 to 644,958 _RS22680 BPHYT_RS22685: BPHYT_RS22685 - shikimate 5-dehydrogenase, at 644,955 to 645,869 _RS22685 BPHYT_RS22690: BPHYT_RS22690 - D-galactonate transporter, at 645,919 to 647,295 _RS22690 Position (kb) 644 645Strain fitness (log2 ratio) -2 -1 0 1at 644.575 kb on + strand, within BPHYT_RS22680at 644.575 kb on + strand, within BPHYT_RS22680at 644.748 kb on + strand, within BPHYT_RS22680at 644.809 kb on - strand, within BPHYT_RS22680at 644.851 kb on + strand, within BPHYT_RS22680at 644.902 kb on + strand, within BPHYT_RS22680at 644.903 kb on - strand, within BPHYT_RS22680at 644.903 kb on - strand, within BPHYT_RS22680at 644.903 kb on - strand, within BPHYT_RS22680at 644.906 kb on + strand, within BPHYT_RS22680at 644.907 kb on - strand, within BPHYT_RS22680at 644.938 kb on - strandat 645.225 kb on + strand, within BPHYT_RS22685at 645.225 kb on + strand, within BPHYT_RS22685at 645.696 kb on + strand, within BPHYT_RS22685

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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644,575 + BPHYT_RS22680 0.16 +0.2
644,575 + BPHYT_RS22680 0.16 -0.2
644,748 + BPHYT_RS22680 0.54 -0.2
644,809 - BPHYT_RS22680 0.67 -0.5
644,851 + BPHYT_RS22680 0.76 +0.5
644,902 + BPHYT_RS22680 0.88 -1.8
644,903 - BPHYT_RS22680 0.88 -2.0
644,903 - BPHYT_RS22680 0.88 -0.6
644,903 - BPHYT_RS22680 0.88 -0.1
644,906 + BPHYT_RS22680 0.88 +0.1
644,907 - BPHYT_RS22680 0.89 -0.2
644,938 - -0.4
645,225 + BPHYT_RS22685 0.30 -1.1
645,225 + BPHYT_RS22685 0.30 -0.5
645,696 + BPHYT_RS22685 0.81 -0.5

Or see this region's nucleotide sequence