Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10845

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS10835 and BPHYT_RS10840 overlap by 4 nucleotidesBPHYT_RS10840 and BPHYT_RS10845 overlap by 8 nucleotidesBPHYT_RS10845 and BPHYT_RS10850 are separated by 307 nucleotides BPHYT_RS10835: BPHYT_RS10835 - carbon monoxide dehydrogenase, at 2,462,586 to 2,465,624 _RS10835 BPHYT_RS10840: BPHYT_RS10840 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 2,465,621 to 2,466,247 _RS10840 BPHYT_RS10845: BPHYT_RS10845 - UbiD family decarboxylase, at 2,466,240 to 2,467,724 _RS10845 BPHYT_RS10850: BPHYT_RS10850 - LysR family transcriptional regulator, at 2,468,032 to 2,469,021 _RS10850 Position (kb) 2466 2467 2468Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2465.258 kb on - strand, within BPHYT_RS10835at 2466.262 kb on + strandat 2466.263 kb on - strandat 2466.358 kb on + strandat 2466.592 kb on + strand, within BPHYT_RS10845at 2466.714 kb on - strand, within BPHYT_RS10845at 2466.874 kb on + strand, within BPHYT_RS10845at 2467.153 kb on + strand, within BPHYT_RS10845at 2467.726 kb on + strandat 2467.726 kb on + strandat 2467.727 kb on - strandat 2467.805 kb on - strandat 2468.224 kb on + strand, within BPHYT_RS10850

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,465,258 - BPHYT_RS10835 0.88 +0.5
2,466,262 + -0.0
2,466,263 - +2.1
2,466,358 + -0.5
2,466,592 + BPHYT_RS10845 0.24 +0.3
2,466,714 - BPHYT_RS10845 0.32 -0.7
2,466,874 + BPHYT_RS10845 0.43 +0.2
2,467,153 + BPHYT_RS10845 0.61 -0.5
2,467,726 + +1.9
2,467,726 + -0.1
2,467,727 - -0.3
2,467,805 - -0.2
2,468,224 + BPHYT_RS10850 0.19 -2.8

Or see this region's nucleotide sequence