Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS30510

Experiment: Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS30505 and AZOBR_RS30510 are separated by 379 nucleotidesAZOBR_RS30510 and AZOBR_RS30515 are separated by 387 nucleotides AZOBR_RS30505: AZOBR_RS30505 - transcriptional regulator, at 190,870 to 191,565 _RS30505 AZOBR_RS30510: AZOBR_RS30510 - heme iron utilization protein, at 191,945 to 192,664 _RS30510 AZOBR_RS30515: AZOBR_RS30515 - phosphoenolpyruvate carboxykinase, at 193,052 to 194,875 _RS30515 Position (kb) 191 192 193Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 190.991 kb on + strand, within AZOBR_RS30505at 191.006 kb on + strand, within AZOBR_RS30505at 191.270 kb on + strand, within AZOBR_RS30505at 191.270 kb on + strand, within AZOBR_RS30505at 191.271 kb on - strand, within AZOBR_RS30505at 191.271 kb on - strand, within AZOBR_RS30505at 191.271 kb on - strand, within AZOBR_RS30505at 191.271 kb on - strand, within AZOBR_RS30505at 191.472 kb on - strand, within AZOBR_RS30505at 191.472 kb on - strand, within AZOBR_RS30505at 191.551 kb on + strandat 191.552 kb on - strandat 191.716 kb on + strandat 191.783 kb on + strandat 191.799 kb on + strandat 192.287 kb on + strand, within AZOBR_RS30510at 192.479 kb on + strand, within AZOBR_RS30510at 192.479 kb on + strand, within AZOBR_RS30510at 192.479 kb on + strand, within AZOBR_RS30510at 192.961 kb on + strandat 192.962 kb on - strandat 193.238 kb on + strand, within AZOBR_RS30515at 193.238 kb on + strand, within AZOBR_RS30515at 193.239 kb on - strand, within AZOBR_RS30515at 193.289 kb on + strand, within AZOBR_RS30515at 193.289 kb on + strand, within AZOBR_RS30515at 193.289 kb on + strand, within AZOBR_RS30515at 193.289 kb on + strand, within AZOBR_RS30515at 193.289 kb on + strand, within AZOBR_RS30515at 193.290 kb on - strand, within AZOBR_RS30515at 193.290 kb on - strand, within AZOBR_RS30515at 193.290 kb on - strandat 193.290 kb on - strand, within AZOBR_RS30515at 193.290 kb on - strand, within AZOBR_RS30515at 193.290 kb on - strand, within AZOBR_RS30515at 193.290 kb on - strand, within AZOBR_RS30515at 193.290 kb on - strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.407 kb on - strand, within AZOBR_RS30515at 193.407 kb on - strand, within AZOBR_RS30515at 193.407 kb on - strand, within AZOBR_RS30515at 193.407 kb on - strand, within AZOBR_RS30515at 193.407 kb on - strand, within AZOBR_RS30515at 193.407 kb on - strand, within AZOBR_RS30515at 193.407 kb on - strand, within AZOBR_RS30515at 193.407 kb on - strand, within AZOBR_RS30515at 193.407 kb on - strand, within AZOBR_RS30515at 193.407 kb on - strand, within AZOBR_RS30515at 193.407 kb on - strand, within AZOBR_RS30515at 193.407 kb on - strand, within AZOBR_RS30515at 193.482 kb on - strand, within AZOBR_RS30515at 193.482 kb on - strand, within AZOBR_RS30515at 193.637 kb on + strand, within AZOBR_RS30515at 193.637 kb on + strand, within AZOBR_RS30515at 193.637 kb on + strand, within AZOBR_RS30515at 193.637 kb on + strand, within AZOBR_RS30515at 193.637 kb on + strand, within AZOBR_RS30515at 193.638 kb on - strand, within AZOBR_RS30515at 193.638 kb on - strand, within AZOBR_RS30515at 193.638 kb on - strand, within AZOBR_RS30515at 193.638 kb on - strand, within AZOBR_RS30515at 193.638 kb on - strand, within AZOBR_RS30515at 193.638 kb on - strand, within AZOBR_RS30515

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
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190,991 + AZOBR_RS30505 0.17 -0.3
191,006 + AZOBR_RS30505 0.20 -3.3
191,270 + AZOBR_RS30505 0.57 -3.4
191,270 + AZOBR_RS30505 0.57 -3.2
191,271 - AZOBR_RS30505 0.58 -2.0
191,271 - AZOBR_RS30505 0.58 -1.1
191,271 - AZOBR_RS30505 0.58 -3.5
191,271 - AZOBR_RS30505 0.58 -2.6
191,472 - AZOBR_RS30505 0.86 -2.0
191,472 - AZOBR_RS30505 0.86 -3.8
191,551 + -1.2
191,552 - -1.1
191,716 + +0.1
191,783 + -3.8
191,799 + -2.0
192,287 + AZOBR_RS30510 0.47 +0.4
192,479 + AZOBR_RS30510 0.74 -0.5
192,479 + AZOBR_RS30510 0.74 -0.4
192,479 + AZOBR_RS30510 0.74 -0.5
192,961 + +0.4
192,962 - +0.1
193,238 + AZOBR_RS30515 0.10 -0.1
193,238 + AZOBR_RS30515 0.10 +0.6
193,239 - AZOBR_RS30515 0.10 +0.6
193,289 + AZOBR_RS30515 0.13 -0.3
193,289 + AZOBR_RS30515 0.13 -1.3
193,289 + AZOBR_RS30515 0.13 -0.4
193,289 + AZOBR_RS30515 0.13 +0.4
193,289 + AZOBR_RS30515 0.13 +0.0
193,290 - AZOBR_RS30515 0.13 -0.7
193,290 - AZOBR_RS30515 0.13 +0.3
193,290 - +0.7
193,290 - AZOBR_RS30515 0.13 +0.3
193,290 - AZOBR_RS30515 0.13 -0.7
193,290 - AZOBR_RS30515 0.13 -0.8
193,290 - AZOBR_RS30515 0.13 -0.1
193,290 - AZOBR_RS30515 0.13 -0.3
193,406 + AZOBR_RS30515 0.19 +1.9
193,406 + AZOBR_RS30515 0.19 -0.7
193,406 + AZOBR_RS30515 0.19 +0.2
193,406 + AZOBR_RS30515 0.19 -0.1
193,406 + AZOBR_RS30515 0.19 +0.7
193,406 + AZOBR_RS30515 0.19 +0.1
193,406 + AZOBR_RS30515 0.19 -2.1
193,406 + AZOBR_RS30515 0.19 -0.7
193,406 + AZOBR_RS30515 0.19 -0.3
193,406 + AZOBR_RS30515 0.19 -0.1
193,406 + AZOBR_RS30515 0.19 -0.5
193,406 + AZOBR_RS30515 0.19 -0.8
193,406 + AZOBR_RS30515 0.19 +0.2
193,406 + AZOBR_RS30515 0.19 +0.3
193,406 + AZOBR_RS30515 0.19 -0.3
193,407 - AZOBR_RS30515 0.19 -0.0
193,407 - AZOBR_RS30515 0.19 -0.1
193,407 - AZOBR_RS30515 0.19 -0.6
193,407 - AZOBR_RS30515 0.19 -2.6
193,407 - AZOBR_RS30515 0.19 -1.0
193,407 - AZOBR_RS30515 0.19 +0.0
193,407 - AZOBR_RS30515 0.19 -0.2
193,407 - AZOBR_RS30515 0.19 +0.1
193,407 - AZOBR_RS30515 0.19 -1.7
193,407 - AZOBR_RS30515 0.19 +0.1
193,407 - AZOBR_RS30515 0.19 -0.0
193,407 - AZOBR_RS30515 0.19 +0.4
193,482 - AZOBR_RS30515 0.24 +0.1
193,482 - AZOBR_RS30515 0.24 -0.4
193,637 + AZOBR_RS30515 0.32 -0.4
193,637 + AZOBR_RS30515 0.32 -0.8
193,637 + AZOBR_RS30515 0.32 -0.1
193,637 + AZOBR_RS30515 0.32 -0.2
193,637 + AZOBR_RS30515 0.32 -0.2
193,638 - AZOBR_RS30515 0.32 -0.2
193,638 - AZOBR_RS30515 0.32 +1.1
193,638 - AZOBR_RS30515 0.32 -0.0
193,638 - AZOBR_RS30515 0.32 -0.3
193,638 - AZOBR_RS30515 0.32 -0.2
193,638 - AZOBR_RS30515 0.32 +1.1

Or see this region's nucleotide sequence