Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_19240

Experiment: LB 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_19225 and AO353_19230 are separated by 204 nucleotidesAO353_19230 and AO353_19235 are separated by 122 nucleotidesAO353_19235 and AO353_19240 are separated by 92 nucleotidesAO353_19240 and AO353_19245 are separated by 327 nucleotidesAO353_19245 and AO353_19250 are separated by 76 nucleotides AO353_19225: AO353_19225 - sodium:proton antiporter, at 4,216,603 to 4,218,558 _19225 AO353_19230: AO353_19230 - glutaredoxin, at 4,218,763 to 4,218,999 _19230 AO353_19235: AO353_19235 - DNA damage response gene with a putative DNA binding domain (PA0922-like) (from data), at 4,219,122 to 4,219,442 _19235 AO353_19240: AO353_19240 - pseudouridine synthase, at 4,219,535 to 4,220,425 _19240 AO353_19245: AO353_19245 - hypothetical protein, at 4,220,753 to 4,220,974 _19245 AO353_19250: AO353_19250 - molybdenum cofactor guanylyltransferase, at 4,221,051 to 4,221,653 _19250 Position (kb) 4219 4220 4221Strain fitness (log2 ratio) -2 -1 0 1 2at 4218.586 kb on + strandat 4218.586 kb on + strandat 4218.586 kb on + strandat 4218.587 kb on - strandat 4218.595 kb on + strandat 4218.596 kb on - strandat 4218.596 kb on - strandat 4218.660 kb on + strandat 4218.660 kb on + strandat 4218.662 kb on + strandat 4218.662 kb on + strandat 4218.662 kb on + strandat 4218.663 kb on - strandat 4218.663 kb on - strandat 4218.663 kb on - strandat 4218.669 kb on + strandat 4218.669 kb on + strandat 4218.669 kb on + strandat 4218.670 kb on - strandat 4218.670 kb on - strandat 4218.670 kb on - strandat 4218.670 kb on - strandat 4218.673 kb on + strandat 4218.673 kb on + strandat 4218.673 kb on + strandat 4218.673 kb on + strandat 4218.674 kb on - strandat 4218.674 kb on - strandat 4218.674 kb on - strandat 4218.727 kb on + strandat 4218.727 kb on + strandat 4218.727 kb on + strandat 4218.727 kb on + strandat 4218.732 kb on + strandat 4218.732 kb on + strandat 4218.733 kb on - strandat 4218.733 kb on - strandat 4218.733 kb on - strandat 4218.733 kb on - strandat 4218.904 kb on + strand, within AO353_19230at 4218.905 kb on - strand, within AO353_19230at 4218.939 kb on + strand, within AO353_19230at 4218.997 kb on + strandat 4218.997 kb on + strandat 4218.998 kb on - strandat 4219.051 kb on - strandat 4219.074 kb on - strandat 4219.087 kb on - strandat 4219.087 kb on - strandat 4219.095 kb on - strandat 4219.256 kb on + strand, within AO353_19235at 4219.257 kb on - strand, within AO353_19235at 4219.257 kb on - strand, within AO353_19235at 4219.257 kb on - strand, within AO353_19235at 4219.257 kb on - strand, within AO353_19235at 4219.257 kb on - strand, within AO353_19235at 4219.341 kb on + strand, within AO353_19235at 4219.341 kb on + strand, within AO353_19235at 4219.341 kb on + strand, within AO353_19235at 4219.341 kb on + strand, within AO353_19235at 4219.341 kb on + strand, within AO353_19235at 4219.342 kb on - strand, within AO353_19235at 4219.342 kb on - strand, within AO353_19235at 4219.342 kb on - strand, within AO353_19235at 4219.342 kb on - strand, within AO353_19235at 4219.342 kb on - strand, within AO353_19235at 4219.342 kb on - strand, within AO353_19235at 4219.342 kb on - strand, within AO353_19235at 4219.342 kb on - strand, within AO353_19235at 4219.342 kb on - strand, within AO353_19235at 4219.342 kb on - strand, within AO353_19235at 4219.350 kb on + strand, within AO353_19235at 4219.350 kb on + strand, within AO353_19235at 4219.350 kb on + strand, within AO353_19235at 4219.351 kb on - strand, within AO353_19235at 4219.351 kb on - strand, within AO353_19235at 4219.351 kb on - strand, within AO353_19235at 4219.381 kb on + strand, within AO353_19235at 4219.381 kb on + strand, within AO353_19235at 4219.381 kb on + strand, within AO353_19235at 4219.381 kb on + strand, within AO353_19235at 4219.381 kb on + strand, within AO353_19235at 4219.382 kb on - strand, within AO353_19235at 4219.382 kb on - strand, within AO353_19235at 4219.382 kb on - strand, within AO353_19235at 4219.382 kb on - strand, within AO353_19235at 4219.382 kb on - strand, within AO353_19235at 4219.382 kb on - strand, within AO353_19235at 4219.382 kb on - strand, within AO353_19235at 4219.443 kb on + strandat 4219.444 kb on - strandat 4219.477 kb on - strandat 4219.477 kb on - strandat 4219.477 kb on - strandat 4219.534 kb on + strandat 4219.534 kb on + strandat 4219.534 kb on + strandat 4219.534 kb on + strandat 4219.534 kb on + strandat 4219.534 kb on + strandat 4219.535 kb on - strandat 4219.535 kb on - strandat 4219.583 kb on + strandat 4219.583 kb on + strandat 4219.583 kb on + strandat 4219.583 kb on + strandat 4219.583 kb on + strandat 4219.584 kb on - strandat 4219.584 kb on - strandat 4219.584 kb on - strandat 4219.584 kb on - strandat 4219.644 kb on + strand, within AO353_19240at 4219.644 kb on + strand, within AO353_19240at 4219.644 kb on + strand, within AO353_19240at 4219.645 kb on - strand, within AO353_19240at 4219.727 kb on + strand, within AO353_19240at 4219.727 kb on + strand, within AO353_19240at 4219.727 kb on + strand, within AO353_19240at 4219.727 kb on + strand, within AO353_19240at 4219.728 kb on - strand, within AO353_19240at 4219.751 kb on + strand, within AO353_19240at 4219.805 kb on + strandat 4219.806 kb on - strand, within AO353_19240at 4219.855 kb on + strand, within AO353_19240at 4219.871 kb on + strand, within AO353_19240at 4219.872 kb on - strand, within AO353_19240at 4219.872 kb on - strand, within AO353_19240at 4219.872 kb on - strand, within AO353_19240at 4219.872 kb on - strand, within AO353_19240at 4220.003 kb on + strand, within AO353_19240at 4220.004 kb on - strand, within AO353_19240at 4220.004 kb on - strand, within AO353_19240at 4220.043 kb on - strand, within AO353_19240at 4220.178 kb on + strand, within AO353_19240at 4220.178 kb on + strand, within AO353_19240at 4220.214 kb on - strand, within AO353_19240at 4220.241 kb on + strand, within AO353_19240at 4220.241 kb on + strand, within AO353_19240at 4220.242 kb on - strand, within AO353_19240at 4220.242 kb on - strand, within AO353_19240at 4220.272 kb on + strand, within AO353_19240at 4220.272 kb on + strand, within AO353_19240at 4220.272 kb on + strand, within AO353_19240at 4220.272 kb on + strand, within AO353_19240at 4220.272 kb on + strand, within AO353_19240at 4220.292 kb on - strand, within AO353_19240at 4220.325 kb on - strand, within AO353_19240at 4220.546 kb on - strandat 4220.546 kb on - strandat 4220.692 kb on + strandat 4220.692 kb on + strandat 4220.692 kb on + strandat 4220.725 kb on + strandat 4220.725 kb on + strandat 4220.726 kb on - strandat 4220.726 kb on - strandat 4220.726 kb on - strandat 4220.731 kb on + strandat 4220.754 kb on + strandat 4220.755 kb on - strandat 4220.755 kb on - strandat 4220.755 kb on - strandat 4220.755 kb on - strandat 4220.755 kb on - strandat 4220.771 kb on - strandat 4220.826 kb on + strand, within AO353_19245at 4220.827 kb on - strand, within AO353_19245at 4220.989 kb on + strandat 4220.989 kb on + strandat 4220.990 kb on - strandat 4221.005 kb on + strandat 4221.020 kb on + strandat 4221.020 kb on + strandat 4221.020 kb on + strandat 4221.020 kb on + strandat 4221.020 kb on + strandat 4221.020 kb on + strandat 4221.020 kb on + strandat 4221.020 kb on + strandat 4221.020 kb on + strandat 4221.020 kb on + strandat 4221.020 kb on + strandat 4221.020 kb on + strandat 4221.020 kb on + strandat 4221.020 kb on + strandat 4221.020 kb on + strandat 4221.021 kb on - strandat 4221.021 kb on - strandat 4221.021 kb on - strandat 4221.021 kb on - strandat 4221.021 kb on - strandat 4221.021 kb on - strandat 4221.021 kb on - strandat 4221.021 kb on - strandat 4221.078 kb on + strandat 4221.079 kb on - strandat 4221.079 kb on - strandat 4221.092 kb on + strandat 4221.092 kb on + strandat 4221.093 kb on - strandat 4221.093 kb on - strandat 4221.093 kb on - strandat 4221.093 kb on - strandat 4221.220 kb on - strand, within AO353_19250at 4221.354 kb on + strand, within AO353_19250

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 30C
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4,218,586 + +0.0
4,218,586 + -1.0
4,218,586 + +0.4
4,218,587 - -1.9
4,218,595 + -0.2
4,218,596 - -1.0
4,218,596 - -1.5
4,218,660 + +0.6
4,218,660 + +0.0
4,218,662 + +0.4
4,218,662 + +0.5
4,218,662 + +0.7
4,218,663 - -1.5
4,218,663 - +1.0
4,218,663 - +0.2
4,218,669 + +0.1
4,218,669 + -0.1
4,218,669 + -0.9
4,218,670 - -0.9
4,218,670 - +0.6
4,218,670 - -0.5
4,218,670 - +0.2
4,218,673 + -0.4
4,218,673 + -0.7
4,218,673 + -0.6
4,218,673 + -0.4
4,218,674 - -1.7
4,218,674 - +0.0
4,218,674 - -2.7
4,218,727 + -1.2
4,218,727 + +1.6
4,218,727 + -1.4
4,218,727 + +0.3
4,218,732 + -0.5
4,218,732 + +0.1
4,218,733 - +0.3
4,218,733 - -0.8
4,218,733 - -0.4
4,218,733 - +0.6
4,218,904 + AO353_19230 0.59 +0.5
4,218,905 - AO353_19230 0.60 -1.6
4,218,939 + AO353_19230 0.74 +0.4
4,218,997 + +2.7
4,218,997 + +0.2
4,218,998 - +0.3
4,219,051 - -0.3
4,219,074 - +0.4
4,219,087 - +1.2
4,219,087 - +0.4
4,219,095 - +0.4
4,219,256 + AO353_19235 0.42 -0.2
4,219,257 - AO353_19235 0.42 +0.3
4,219,257 - AO353_19235 0.42 +0.3
4,219,257 - AO353_19235 0.42 -2.4
4,219,257 - AO353_19235 0.42 +0.5
4,219,257 - AO353_19235 0.42 +1.5
4,219,341 + AO353_19235 0.68 -1.6
4,219,341 + AO353_19235 0.68 +0.3
4,219,341 + AO353_19235 0.68 +0.3
4,219,341 + AO353_19235 0.68 +0.3
4,219,341 + AO353_19235 0.68 +0.0
4,219,342 - AO353_19235 0.69 +0.1
4,219,342 - AO353_19235 0.69 +0.7
4,219,342 - AO353_19235 0.69 -1.6
4,219,342 - AO353_19235 0.69 -0.2
4,219,342 - AO353_19235 0.69 +1.3
4,219,342 - AO353_19235 0.69 -0.6
4,219,342 - AO353_19235 0.69 +0.5
4,219,342 - AO353_19235 0.69 -1.7
4,219,342 - AO353_19235 0.69 -1.0
4,219,342 - AO353_19235 0.69 +1.3
4,219,350 + AO353_19235 0.71 -0.7
4,219,350 + AO353_19235 0.71 -0.0
4,219,350 + AO353_19235 0.71 -0.4
4,219,351 - AO353_19235 0.71 +0.5
4,219,351 - AO353_19235 0.71 -0.2
4,219,351 - AO353_19235 0.71 -1.0
4,219,381 + AO353_19235 0.81 -0.3
4,219,381 + AO353_19235 0.81 +0.5
4,219,381 + AO353_19235 0.81 +0.5
4,219,381 + AO353_19235 0.81 -0.9
4,219,381 + AO353_19235 0.81 +0.3
4,219,382 - AO353_19235 0.81 +0.5
4,219,382 - AO353_19235 0.81 +0.4
4,219,382 - AO353_19235 0.81 +0.6
4,219,382 - AO353_19235 0.81 -0.6
4,219,382 - AO353_19235 0.81 -0.4
4,219,382 - AO353_19235 0.81 +1.3
4,219,382 - AO353_19235 0.81 +0.3
4,219,443 + +0.8
4,219,444 - +0.3
4,219,477 - +0.3
4,219,477 - -0.1
4,219,477 - +0.7
4,219,534 + -0.5
4,219,534 + -1.0
4,219,534 + +1.6
4,219,534 + +0.1
4,219,534 + +0.4
4,219,534 + -0.2
4,219,535 - +0.5
4,219,535 - +0.3
4,219,583 + -1.1
4,219,583 + -1.4
4,219,583 + -1.1
4,219,583 + -1.3
4,219,583 + +0.4
4,219,584 - +0.1
4,219,584 - +0.7
4,219,584 - -0.9
4,219,584 - -0.3
4,219,644 + AO353_19240 0.12 +0.4
4,219,644 + AO353_19240 0.12 -1.0
4,219,644 + AO353_19240 0.12 +0.6
4,219,645 - AO353_19240 0.12 +1.4
4,219,727 + AO353_19240 0.22 -0.9
4,219,727 + AO353_19240 0.22 -1.1
4,219,727 + AO353_19240 0.22 -0.2
4,219,727 + AO353_19240 0.22 -0.9
4,219,728 - AO353_19240 0.22 -1.2
4,219,751 + AO353_19240 0.24 +0.3
4,219,805 + -0.2
4,219,806 - AO353_19240 0.30 -1.4
4,219,855 + AO353_19240 0.36 -0.9
4,219,871 + AO353_19240 0.38 +1.4
4,219,872 - AO353_19240 0.38 -1.3
4,219,872 - AO353_19240 0.38 +0.1
4,219,872 - AO353_19240 0.38 -1.2
4,219,872 - AO353_19240 0.38 -0.1
4,220,003 + AO353_19240 0.53 +0.3
4,220,004 - AO353_19240 0.53 -0.3
4,220,004 - AO353_19240 0.53 -1.3
4,220,043 - AO353_19240 0.57 +0.8
4,220,178 + AO353_19240 0.72 -2.2
4,220,178 + AO353_19240 0.72 -1.1
4,220,214 - AO353_19240 0.76 +0.6
4,220,241 + AO353_19240 0.79 +0.2
4,220,241 + AO353_19240 0.79 -2.7
4,220,242 - AO353_19240 0.79 -2.6
4,220,242 - AO353_19240 0.79 -1.2
4,220,272 + AO353_19240 0.83 -0.7
4,220,272 + AO353_19240 0.83 -1.2
4,220,272 + AO353_19240 0.83 +0.7
4,220,272 + AO353_19240 0.83 +0.4
4,220,272 + AO353_19240 0.83 -1.5
4,220,292 - AO353_19240 0.85 -0.8
4,220,325 - AO353_19240 0.89 -1.3
4,220,546 - -0.1
4,220,546 - -1.2
4,220,692 + +0.1
4,220,692 + -0.2
4,220,692 + +0.4
4,220,725 + +0.8
4,220,725 + +0.4
4,220,726 - -1.2
4,220,726 - -1.0
4,220,726 - +0.7
4,220,731 + -0.8
4,220,754 + -0.3
4,220,755 - -0.4
4,220,755 - -0.0
4,220,755 - -0.3
4,220,755 - -0.3
4,220,755 - -1.6
4,220,771 - -0.2
4,220,826 + AO353_19245 0.33 -0.6
4,220,827 - AO353_19245 0.33 +1.1
4,220,989 + -0.5
4,220,989 + -0.7
4,220,990 - -0.1
4,221,005 + -0.6
4,221,020 + +0.1
4,221,020 + -1.4
4,221,020 + -0.6
4,221,020 + -1.3
4,221,020 + +0.8
4,221,020 + -0.2
4,221,020 + -0.9
4,221,020 + -0.2
4,221,020 + +0.6
4,221,020 + -1.4
4,221,020 + +0.3
4,221,020 + +0.6
4,221,020 + -1.5
4,221,020 + +1.2
4,221,020 + +1.2
4,221,021 - +0.3
4,221,021 - -2.2
4,221,021 - +0.6
4,221,021 - -0.7
4,221,021 - +1.9
4,221,021 - -2.4
4,221,021 - +0.0
4,221,021 - -0.2
4,221,078 + -1.5
4,221,079 - +0.2
4,221,079 - +0.4
4,221,092 + +0.9
4,221,092 + +0.3
4,221,093 - +0.8
4,221,093 - +0.1
4,221,093 - +2.4
4,221,093 - +1.2
4,221,220 - AO353_19250 0.28 +0.8
4,221,354 + AO353_19250 0.50 +0.7

Or see this region's nucleotide sequence