Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3027

Experiment: 10 day starvation, 37C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_3026 and DvMF_3027 are separated by 29 nucleotidesDvMF_3027 and DvMF_3028 are separated by 1 nucleotidesDvMF_3028 and DvMF_3029 are separated by 4 nucleotides DvMF_3026: DvMF_3026 - basic membrane lipoprotein (RefSeq), at 3,819,757 to 3,820,899 _3026 DvMF_3027: DvMF_3027 - inner-membrane translocator (RefSeq), at 3,820,929 to 3,822,002 _3027 DvMF_3028: DvMF_3028 - inner-membrane translocator (RefSeq), at 3,822,004 to 3,822,930 _3028 DvMF_3029: DvMF_3029 - ABC transporter related (RefSeq), at 3,822,935 to 3,824,548 _3029 Position (kb) 3820 3821 3822 3823Strain fitness (log2 ratio) -3 -2 -1 0 1at 3820.180 kb on + strand, within DvMF_3026at 3820.604 kb on + strand, within DvMF_3026at 3821.160 kb on - strand, within DvMF_3027at 3821.339 kb on - strand, within DvMF_3027at 3821.526 kb on - strand, within DvMF_3027at 3821.658 kb on + strand, within DvMF_3027at 3822.070 kb on - strandat 3822.298 kb on - strand, within DvMF_3028at 3822.457 kb on - strand, within DvMF_3028at 3822.836 kb on - strand, within DvMF_3028

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 10 day starvation, 37C
remove
3,820,180 + DvMF_3026 0.37 +0.3
3,820,604 + DvMF_3026 0.74 -0.2
3,821,160 - DvMF_3027 0.22 -0.1
3,821,339 - DvMF_3027 0.38 -0.4
3,821,526 - DvMF_3027 0.56 +0.5
3,821,658 + DvMF_3027 0.68 -2.8
3,822,070 - +0.0
3,822,298 - DvMF_3028 0.32 -0.6
3,822,457 - DvMF_3028 0.49 -0.6
3,822,836 - DvMF_3028 0.90 -0.2

Or see this region's nucleotide sequence