Experiment: 10 day starvation, 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2991 and DvMF_2992 are separated by 143 nucleotides DvMF_2992 and DvMF_R0077 are separated by 405 nucleotides DvMF_R0077 and DvMF_2993 are separated by 274 nucleotides
DvMF_2991: DvMF_2991 - Radical SAM domain protein (RefSeq), at 3,771,865 to 3,773,058
_2991
DvMF_2992: DvMF_2992 - ATPase, P-type (transporting), HAD superfamily, subfamily IC (RefSeq), at 3,773,202 to 3,776,096
_2992
DvMF_R0077: DvMF_R0077 - tRNA-Asn (RefSeq), at 3,776,502 to 3,776,577
_R0077
DvMF_2993: DvMF_2993 - lysyl-tRNA synthetase (RefSeq), at 3,776,852 to 3,778,357
_2993
Position (kb)
3773
3774
3775
3776
3777 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3772.208 kb on + strand, within DvMF_2991 at 3772.333 kb on + strand, within DvMF_2991 at 3772.359 kb on + strand, within DvMF_2991 at 3772.663 kb on - strand, within DvMF_2991 at 3772.942 kb on - strand at 3773.082 kb on + strand at 3773.258 kb on + strand at 3773.306 kb on + strand at 3773.333 kb on - strand at 3773.592 kb on + strand, within DvMF_2992 at 3773.593 kb on - strand, within DvMF_2992 at 3773.640 kb on - strand, within DvMF_2992 at 3773.708 kb on + strand, within DvMF_2992 at 3773.720 kb on + strand, within DvMF_2992 at 3774.290 kb on + strand, within DvMF_2992 at 3774.298 kb on - strand, within DvMF_2992 at 3774.317 kb on - strand, within DvMF_2992 at 3774.474 kb on - strand, within DvMF_2992 at 3774.686 kb on + strand, within DvMF_2992 at 3774.721 kb on + strand, within DvMF_2992 at 3774.780 kb on - strand, within DvMF_2992 at 3774.858 kb on - strand, within DvMF_2992 at 3774.887 kb on - strand, within DvMF_2992 at 3774.924 kb on - strand, within DvMF_2992 at 3774.988 kb on + strand, within DvMF_2992 at 3774.988 kb on + strand, within DvMF_2992 at 3775.036 kb on + strand, within DvMF_2992 at 3775.295 kb on - strand, within DvMF_2992 at 3775.723 kb on - strand, within DvMF_2992 at 3775.812 kb on - strand at 3775.958 kb on + strand at 3776.121 kb on - strand at 3776.298 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 10 day starvation, 37C remove 3,772,208 + DvMF_2991 0.29 +0.7 3,772,333 + DvMF_2991 0.39 +0.4 3,772,359 + DvMF_2991 0.41 +0.7 3,772,663 - DvMF_2991 0.67 +0.8 3,772,942 - +0.3 3,773,082 + -0.5 3,773,258 + -0.8 3,773,306 + -1.5 3,773,333 - +0.8 3,773,592 + DvMF_2992 0.13 -0.7 3,773,593 - DvMF_2992 0.14 -0.9 3,773,640 - DvMF_2992 0.15 -1.4 3,773,708 + DvMF_2992 0.17 -1.5 3,773,720 + DvMF_2992 0.18 -0.4 3,774,290 + DvMF_2992 0.38 -1.6 3,774,298 - DvMF_2992 0.38 -0.8 3,774,317 - DvMF_2992 0.39 -0.5 3,774,474 - DvMF_2992 0.44 -0.7 3,774,686 + DvMF_2992 0.51 -0.5 3,774,721 + DvMF_2992 0.52 -1.0 3,774,780 - DvMF_2992 0.55 -0.5 3,774,858 - DvMF_2992 0.57 -0.2 3,774,887 - DvMF_2992 0.58 -1.6 3,774,924 - DvMF_2992 0.59 -1.5 3,774,988 + DvMF_2992 0.62 -2.0 3,774,988 + DvMF_2992 0.62 +0.6 3,775,036 + DvMF_2992 0.63 -1.0 3,775,295 - DvMF_2992 0.72 -4.2 3,775,723 - DvMF_2992 0.87 -0.9 3,775,812 - -2.9 3,775,958 + -1.2 3,776,121 - +0.5 3,776,298 + +0.1
Or see this region's nucleotide sequence