Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2951

Experiment: 10 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2950 and DvMF_2951 are separated by 222 nucleotidesDvMF_2951 and DvMF_2952 are separated by 318 nucleotides DvMF_2950: DvMF_2950 - flagellin domain protein (RefSeq), at 3,722,262 to 3,723,152 _2950 DvMF_2951: DvMF_2951 - hypothetical protein (RefSeq), at 3,723,375 to 3,724,010 _2951 DvMF_2952: DvMF_2952 - metal dependent phosphohydrolase (RefSeq), at 3,724,329 to 3,724,952 _2952 Position (kb) 3723 3724 3725Strain fitness (log2 ratio) -1 0 1 2at 3722.620 kb on - strand, within DvMF_2950at 3722.672 kb on + strand, within DvMF_2950at 3722.680 kb on - strand, within DvMF_2950at 3722.732 kb on + strand, within DvMF_2950at 3722.762 kb on - strand, within DvMF_2950at 3722.954 kb on - strand, within DvMF_2950at 3722.954 kb on - strand, within DvMF_2950at 3723.500 kb on - strand, within DvMF_2951at 3723.607 kb on + strand, within DvMF_2951at 3723.615 kb on - strand, within DvMF_2951at 3723.912 kb on + strand, within DvMF_2951at 3724.013 kb on - strandat 3724.013 kb on - strandat 3724.079 kb on + strandat 3724.120 kb on - strandat 3724.163 kb on - strandat 3724.644 kb on - strand, within DvMF_2952at 3724.688 kb on + strand, within DvMF_2952at 3724.754 kb on - strand, within DvMF_2952at 3724.758 kb on - strand, within DvMF_2952at 3724.991 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 10 day starvation, 37C
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3,722,620 - DvMF_2950 0.40 +1.3
3,722,672 + DvMF_2950 0.46 +0.6
3,722,680 - DvMF_2950 0.47 +0.9
3,722,732 + DvMF_2950 0.53 -0.1
3,722,762 - DvMF_2950 0.56 -0.1
3,722,954 - DvMF_2950 0.78 +0.9
3,722,954 - DvMF_2950 0.78 +0.3
3,723,500 - DvMF_2951 0.20 +0.1
3,723,607 + DvMF_2951 0.36 +0.6
3,723,615 - DvMF_2951 0.38 +0.2
3,723,912 + DvMF_2951 0.84 +0.4
3,724,013 - +0.6
3,724,013 - +0.9
3,724,079 + +0.7
3,724,120 - +0.7
3,724,163 - +0.3
3,724,644 - DvMF_2952 0.50 +2.0
3,724,688 + DvMF_2952 0.58 -0.2
3,724,754 - DvMF_2952 0.68 +0.1
3,724,758 - DvMF_2952 0.69 -0.0
3,724,991 + +1.1

Or see this region's nucleotide sequence