Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2860

Experiment: 10 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2859 and DvMF_2860 are separated by 265 nucleotidesDvMF_2860 and DvMF_2861 are separated by 227 nucleotides DvMF_2859: DvMF_2859 - hypothetical protein (RefSeq), at 3,610,877 to 3,611,665 _2859 DvMF_2860: DvMF_2860 - response regulator receiver protein (RefSeq), at 3,611,931 to 3,612,329 _2860 DvMF_2861: DvMF_2861 - import inner membrane translocase subunit Tim44 (RefSeq), at 3,612,557 to 3,613,483 _2861 Position (kb) 3611 3612 3613Strain fitness (log2 ratio) -1 0 1at 3611.437 kb on - strand, within DvMF_2859at 3611.736 kb on - strandat 3611.976 kb on + strand, within DvMF_2860at 3612.318 kb on - strandat 3612.690 kb on + strand, within DvMF_2861at 3612.698 kb on - strand, within DvMF_2861at 3612.706 kb on + strand, within DvMF_2861at 3612.984 kb on + strand, within DvMF_2861at 3613.182 kb on + strand, within DvMF_2861

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Per-strain Table

Position Strand Gene LocusTag Fraction 10 day starvation, 37C
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3,611,437 - DvMF_2859 0.71 +1.2
3,611,736 - +0.6
3,611,976 + DvMF_2860 0.11 +1.6
3,612,318 - +1.1
3,612,690 + DvMF_2861 0.14 +0.1
3,612,698 - DvMF_2861 0.15 +0.5
3,612,706 + DvMF_2861 0.16 +0.3
3,612,984 + DvMF_2861 0.46 +0.2
3,613,182 + DvMF_2861 0.67 +0.3

Or see this region's nucleotide sequence