Experiment: 10 day starvation, 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2640 and DvMF_2641 are separated by 247 nucleotides DvMF_2641 and DvMF_2642 are separated by 175 nucleotides DvMF_2642 and DvMF_2643 are separated by 515 nucleotides
DvMF_2640: DvMF_2640 - PAS/PAC sensor signal transduction histidine kinase (RefSeq), at 3,337,856 to 3,340,723
_2640
DvMF_2641: DvMF_2641 - twin-arginine translocation protein, TatA/E family subunit (RefSeq), at 3,340,971 to 3,341,144
_2641
DvMF_2642: DvMF_2642 - hypothetical protein (RefSeq), at 3,341,320 to 3,342,693
_2642
DvMF_2643: DvMF_2643 - response regulator receiver modulated CheW protein (RefSeq), at 3,343,209 to 3,344,381
_2643
Position (kb)
3341
3342
3343 Strain fitness (log2 ratio)
-1
0
1 at 3340.349 kb on + strand, within DvMF_2640 at 3340.349 kb on + strand, within DvMF_2640 at 3340.429 kb on + strand, within DvMF_2640 at 3340.759 kb on + strand at 3341.216 kb on + strand at 3341.414 kb on + strand at 3341.482 kb on + strand, within DvMF_2642 at 3341.688 kb on + strand, within DvMF_2642 at 3341.695 kb on - strand, within DvMF_2642 at 3341.734 kb on + strand, within DvMF_2642 at 3341.889 kb on - strand, within DvMF_2642 at 3342.044 kb on - strand, within DvMF_2642 at 3342.135 kb on + strand, within DvMF_2642 at 3342.225 kb on - strand, within DvMF_2642 at 3342.340 kb on - strand, within DvMF_2642 at 3342.612 kb on + strand at 3343.053 kb on - strand at 3343.090 kb on + strand at 3343.217 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 10 day starvation, 37C remove 3,340,349 + DvMF_2640 0.87 -0.8 3,340,349 + DvMF_2640 0.87 -0.2 3,340,429 + DvMF_2640 0.90 -1.4 3,340,759 + +0.4 3,341,216 + -0.9 3,341,414 + +0.3 3,341,482 + DvMF_2642 0.12 +0.4 3,341,688 + DvMF_2642 0.27 +0.6 3,341,695 - DvMF_2642 0.27 +0.4 3,341,734 + DvMF_2642 0.30 +0.6 3,341,889 - DvMF_2642 0.41 +1.1 3,342,044 - DvMF_2642 0.53 +0.5 3,342,135 + DvMF_2642 0.59 +0.7 3,342,225 - DvMF_2642 0.66 +0.6 3,342,340 - DvMF_2642 0.74 +0.1 3,342,612 + +0.4 3,343,053 - +0.5 3,343,090 + +0.6 3,343,217 + +1.5
Or see this region's nucleotide sequence