Experiment: 10 day starvation, 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2028 and DvMF_2029 are separated by 302 nucleotides DvMF_2029 and DvMF_2030 are separated by 265 nucleotides DvMF_2030 and DvMF_2031 are separated by 586 nucleotides
DvMF_2028: DvMF_2028 - NLP/P60 protein (RefSeq), at 2,513,208 to 2,513,909
_2028
DvMF_2029: DvMF_2029 - histone family protein DNA-binding protein (RefSeq), at 2,514,212 to 2,514,499
_2029
DvMF_2030: DvMF_2030 - MerR family transcriptional regulator (RefSeq), at 2,514,765 to 2,515,484
_2030
DvMF_2031: DvMF_2031 - ribonucleotide-diphosphate reductase subunit alpha (RefSeq), at 2,516,071 to 2,518,383
_2031
Position (kb)
2514
2515
2516 Strain fitness (log2 ratio)
-1
0
1
2 at 2513.788 kb on + strand, within DvMF_2028 at 2513.903 kb on + strand at 2514.048 kb on - strand at 2514.050 kb on + strand at 2514.187 kb on - strand at 2514.558 kb on + strand at 2514.697 kb on + strand at 2514.981 kb on + strand, within DvMF_2030 at 2515.197 kb on + strand, within DvMF_2030 at 2515.212 kb on - strand, within DvMF_2030 at 2515.432 kb on + strand at 2515.595 kb on + strand at 2515.901 kb on + strand at 2516.004 kb on - strand at 2516.130 kb on - strand at 2516.140 kb on - strand at 2516.226 kb on + strand at 2516.234 kb on - strand at 2516.296 kb on + strand at 2516.351 kb on + strand, within DvMF_2031 at 2516.359 kb on - strand, within DvMF_2031 at 2516.397 kb on - strand, within DvMF_2031 at 2516.399 kb on + strand, within DvMF_2031 at 2516.482 kb on + strand, within DvMF_2031
Per-strain Table
Position Strand Gene LocusTag Fraction 10 day starvation, 37C remove 2,513,788 + DvMF_2028 0.83 +0.1 2,513,903 + +0.1 2,514,048 - +0.3 2,514,050 + +0.2 2,514,187 - -0.1 2,514,558 + +0.6 2,514,697 + +0.4 2,514,981 + DvMF_2030 0.30 +0.2 2,515,197 + DvMF_2030 0.60 -0.1 2,515,212 - DvMF_2030 0.62 +0.1 2,515,432 + -0.6 2,515,595 + +0.4 2,515,901 + +1.8 2,516,004 - +0.6 2,516,130 - +1.9 2,516,140 - +0.3 2,516,226 + +0.4 2,516,234 - -0.1 2,516,296 + +0.6 2,516,351 + DvMF_2031 0.12 -0.3 2,516,359 - DvMF_2031 0.12 -0.7 2,516,397 - DvMF_2031 0.14 +0.6 2,516,399 + DvMF_2031 0.14 -0.4 2,516,482 + DvMF_2031 0.18 +0.3
Or see this region's nucleotide sequence