Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1907

Experiment: 10 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1906 and DvMF_1907 are separated by 91 nucleotidesDvMF_1907 and DvMF_1908 are separated by 433 nucleotides DvMF_1906: DvMF_1906 - DegT/DnrJ/EryC1/StrS aminotransferase (RefSeq), at 2,347,424 to 2,348,740 _1906 DvMF_1907: DvMF_1907 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 2,348,832 to 2,351,996 _1907 DvMF_1908: DvMF_1908 - glucose-1-phosphate cytidylyltransferase (RefSeq), at 2,352,430 to 2,353,212 _1908 Position (kb) 2348 2349 2350 2351 2352Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2348.552 kb on + strand, within DvMF_1906at 2348.742 kb on - strandat 2348.742 kb on - strandat 2348.742 kb on - strandat 2349.100 kb on - strandat 2349.148 kb on - strandat 2349.486 kb on + strand, within DvMF_1907at 2349.517 kb on + strand, within DvMF_1907at 2349.596 kb on + strand, within DvMF_1907at 2349.604 kb on - strand, within DvMF_1907at 2349.635 kb on - strand, within DvMF_1907at 2349.722 kb on + strand, within DvMF_1907at 2349.781 kb on + strand, within DvMF_1907at 2349.789 kb on - strand, within DvMF_1907at 2349.904 kb on + strand, within DvMF_1907at 2349.914 kb on + strand, within DvMF_1907at 2350.058 kb on + strand, within DvMF_1907at 2350.156 kb on + strand, within DvMF_1907at 2350.209 kb on + strand, within DvMF_1907at 2350.342 kb on - strand, within DvMF_1907at 2350.411 kb on - strand, within DvMF_1907at 2350.447 kb on + strand, within DvMF_1907at 2350.447 kb on + strand, within DvMF_1907at 2350.473 kb on + strand, within DvMF_1907at 2350.494 kb on - strand, within DvMF_1907at 2350.494 kb on - strand, within DvMF_1907at 2350.494 kb on - strand, within DvMF_1907at 2350.705 kb on - strand, within DvMF_1907at 2350.758 kb on - strand, within DvMF_1907at 2350.822 kb on + strand, within DvMF_1907at 2350.856 kb on - strand, within DvMF_1907at 2350.995 kb on - strand, within DvMF_1907at 2351.185 kb on + strand, within DvMF_1907at 2351.190 kb on + strand, within DvMF_1907at 2351.193 kb on - strand, within DvMF_1907at 2351.198 kb on - strand, within DvMF_1907at 2351.263 kb on - strand, within DvMF_1907at 2351.405 kb on - strand, within DvMF_1907at 2351.410 kb on + strand, within DvMF_1907at 2351.466 kb on - strand, within DvMF_1907at 2351.477 kb on - strand, within DvMF_1907at 2351.560 kb on + strand, within DvMF_1907at 2352.065 kb on + strandat 2352.083 kb on + strandat 2352.335 kb on - strandat 2352.663 kb on + strand, within DvMF_1908at 2352.742 kb on + strand, within DvMF_1908at 2352.767 kb on - strand, within DvMF_1908

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Per-strain Table

Position Strand Gene LocusTag Fraction 10 day starvation, 37C
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2,348,552 + DvMF_1906 0.86 -2.0
2,348,742 - -0.0
2,348,742 - +1.7
2,348,742 - +0.4
2,349,100 - +1.4
2,349,148 - +1.3
2,349,486 + DvMF_1907 0.21 +0.9
2,349,517 + DvMF_1907 0.22 +1.5
2,349,596 + DvMF_1907 0.24 +1.0
2,349,604 - DvMF_1907 0.24 +0.7
2,349,635 - DvMF_1907 0.25 +1.2
2,349,722 + DvMF_1907 0.28 +0.5
2,349,781 + DvMF_1907 0.30 +0.8
2,349,789 - DvMF_1907 0.30 +0.8
2,349,904 + DvMF_1907 0.34 +1.1
2,349,914 + DvMF_1907 0.34 +0.4
2,350,058 + DvMF_1907 0.39 +1.0
2,350,156 + DvMF_1907 0.42 +1.5
2,350,209 + DvMF_1907 0.44 +0.5
2,350,342 - DvMF_1907 0.48 +1.9
2,350,411 - DvMF_1907 0.50 +1.1
2,350,447 + DvMF_1907 0.51 +1.2
2,350,447 + DvMF_1907 0.51 +0.9
2,350,473 + DvMF_1907 0.52 +1.2
2,350,494 - DvMF_1907 0.53 +1.4
2,350,494 - DvMF_1907 0.53 +1.0
2,350,494 - DvMF_1907 0.53 +1.0
2,350,705 - DvMF_1907 0.59 +0.8
2,350,758 - DvMF_1907 0.61 +4.2
2,350,822 + DvMF_1907 0.63 +1.3
2,350,856 - DvMF_1907 0.64 +1.0
2,350,995 - DvMF_1907 0.68 +1.0
2,351,185 + DvMF_1907 0.74 +2.2
2,351,190 + DvMF_1907 0.75 +1.1
2,351,193 - DvMF_1907 0.75 +1.7
2,351,198 - DvMF_1907 0.75 +1.3
2,351,263 - DvMF_1907 0.77 +1.0
2,351,405 - DvMF_1907 0.81 +0.9
2,351,410 + DvMF_1907 0.81 +1.0
2,351,466 - DvMF_1907 0.83 +0.9
2,351,477 - DvMF_1907 0.84 +1.1
2,351,560 + DvMF_1907 0.86 +1.0
2,352,065 + +0.5
2,352,083 + +0.3
2,352,335 - -0.2
2,352,663 + DvMF_1908 0.30 -1.6
2,352,742 + DvMF_1908 0.40 -4.2
2,352,767 - DvMF_1908 0.43 -2.5

Or see this region's nucleotide sequence