Experiment: 10 day starvation, 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1892 and DvMF_1893 overlap by 4 nucleotides DvMF_1893 and DvMF_1894 are separated by 143 nucleotides DvMF_1894 and DvMF_1895 are separated by 156 nucleotides
DvMF_1892: DvMF_1892 - CMP-N-acetylneuraminic acid synthetase (RefSeq), at 2,328,895 to 2,330,853
_1892
DvMF_1893: DvMF_1893 - acylneuraminate cytidylyltransferase (RefSeq), at 2,330,850 to 2,331,545
_1893
DvMF_1894: DvMF_1894 - N-acylneuraminate-9-phosphate synthase (RefSeq), at 2,331,689 to 2,332,753
_1894
DvMF_1895: DvMF_1895 - hypothetical protein (RefSeq), at 2,332,910 to 2,334,592
_1895
Position (kb)
2331
2332
2333 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2330.709 kb on - strand at 2330.734 kb on + strand at 2330.892 kb on + strand at 2330.947 kb on - strand, within DvMF_1893 at 2331.145 kb on - strand, within DvMF_1893 at 2331.257 kb on + strand, within DvMF_1893 at 2331.373 kb on + strand, within DvMF_1893 at 2331.378 kb on + strand, within DvMF_1893 at 2331.405 kb on - strand, within DvMF_1893 at 2331.420 kb on - strand, within DvMF_1893 at 2331.584 kb on + strand at 2331.687 kb on - strand at 2331.898 kb on + strand, within DvMF_1894 at 2332.027 kb on - strand, within DvMF_1894 at 2332.458 kb on - strand, within DvMF_1894 at 2332.667 kb on - strand at 2332.844 kb on - strand at 2333.054 kb on - strand at 2333.109 kb on - strand, within DvMF_1895 at 2333.129 kb on - strand, within DvMF_1895 at 2333.204 kb on - strand, within DvMF_1895 at 2333.487 kb on + strand, within DvMF_1895 at 2333.490 kb on - strand, within DvMF_1895 at 2333.690 kb on - strand, within DvMF_1895 at 2333.707 kb on + strand, within DvMF_1895 at 2333.715 kb on - strand, within DvMF_1895
Per-strain Table
Position Strand Gene LocusTag Fraction 10 day starvation, 37C remove 2,330,709 - +0.9 2,330,734 + +0.9 2,330,892 + -2.2 2,330,947 - DvMF_1893 0.14 -2.2 2,331,145 - DvMF_1893 0.42 -0.5 2,331,257 + DvMF_1893 0.58 -2.1 2,331,373 + DvMF_1893 0.75 -1.9 2,331,378 + DvMF_1893 0.76 -3.7 2,331,405 - DvMF_1893 0.80 -2.1 2,331,420 - DvMF_1893 0.82 -2.9 2,331,584 + +0.3 2,331,687 - +0.2 2,331,898 + DvMF_1894 0.20 -2.0 2,332,027 - DvMF_1894 0.32 -3.0 2,332,458 - DvMF_1894 0.72 -1.8 2,332,667 - -2.0 2,332,844 - +0.5 2,333,054 - +0.2 2,333,109 - DvMF_1895 0.12 -1.6 2,333,129 - DvMF_1895 0.13 -1.3 2,333,204 - DvMF_1895 0.17 -1.8 2,333,487 + DvMF_1895 0.34 -1.6 2,333,490 - DvMF_1895 0.34 -3.2 2,333,690 - DvMF_1895 0.46 -1.0 2,333,707 + DvMF_1895 0.47 -1.5 2,333,715 - DvMF_1895 0.48 -1.8
Or see this region's nucleotide sequence