Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1699

Experiment: 10 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1698 and DvMF_1699 are separated by 319 nucleotidesDvMF_1699 and DvMF_1700 are separated by 209 nucleotides DvMF_1698: DvMF_1698 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,069,192 to 2,072,083 _1698 DvMF_1699: DvMF_1699 - non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family (RefSeq), at 2,072,403 to 2,073,062 _1699 DvMF_1700: DvMF_1700 - PAS/PAC sensor signal transduction histidine kinase (RefSeq), at 2,073,272 to 2,075,047 _1700 Position (kb) 2072 2073 2074Strain fitness (log2 ratio) -1 0 1 2 3 4at 2071.416 kb on + strand, within DvMF_1698at 2071.424 kb on - strand, within DvMF_1698at 2071.545 kb on - strand, within DvMF_1698at 2071.576 kb on - strand, within DvMF_1698at 2071.822 kb on - strandat 2072.038 kb on - strandat 2072.077 kb on + strandat 2072.148 kb on + strandat 2072.201 kb on - strandat 2072.409 kb on - strandat 2073.110 kb on - strandat 2073.110 kb on - strandat 2073.228 kb on - strandat 2073.239 kb on - strandat 2073.305 kb on - strandat 2073.717 kb on - strand, within DvMF_1700at 2073.730 kb on - strand, within DvMF_1700at 2073.800 kb on + strand, within DvMF_1700at 2073.812 kb on + strand, within DvMF_1700

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Per-strain Table

Position Strand Gene LocusTag Fraction 10 day starvation, 37C
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2,071,416 + DvMF_1698 0.77 -0.3
2,071,424 - DvMF_1698 0.77 +1.0
2,071,545 - DvMF_1698 0.81 +0.8
2,071,576 - DvMF_1698 0.82 +1.1
2,071,822 - -0.2
2,072,038 - +0.4
2,072,077 + +0.0
2,072,148 + +0.5
2,072,201 - +0.0
2,072,409 - +0.7
2,073,110 - +0.2
2,073,110 - +0.6
2,073,228 - +0.6
2,073,239 - +0.9
2,073,305 - +4.6
2,073,717 - DvMF_1700 0.25 +3.0
2,073,730 - DvMF_1700 0.26 +3.6
2,073,800 + DvMF_1700 0.30 +2.9
2,073,812 + DvMF_1700 0.30 +2.9

Or see this region's nucleotide sequence