Experiment: 10 day starvation, 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1597 and DvMF_1598 are separated by 203 nucleotides DvMF_1598 and DvMF_1599 are separated by 1 nucleotides DvMF_1599 and DvMF_1600 overlap by 4 nucleotides DvMF_1600 and DvMF_1601 overlap by 1 nucleotides
DvMF_1597: DvMF_1597 - NADH dehydrogenase (quinone) (RefSeq), at 1,968,770 to 1,969,744
_1597
DvMF_1598: DvMF_1598 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 1,969,948 to 1,970,571
_1598
DvMF_1599: DvMF_1599 - NADH-ubiquinone/plastoquinone oxidoreductase chain 6 (RefSeq), at 1,970,573 to 1,971,079
_1599
DvMF_1600: DvMF_1600 - NADH-ubiquinone oxidoreductase chain 4L (RefSeq), at 1,971,076 to 1,971,390
_1600
DvMF_1601: DvMF_1601 - putative monovalent cation/H+ antiporter subunit D (RefSeq), at 1,971,390 to 1,972,889
_1601
Position (kb)
1969
1970
1971 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1969.124 kb on - strand, within DvMF_1597 at 1969.174 kb on - strand, within DvMF_1597 at 1969.261 kb on + strand, within DvMF_1597 at 1969.344 kb on - strand, within DvMF_1597 at 1969.416 kb on - strand, within DvMF_1597 at 1969.661 kb on - strand at 1969.749 kb on + strand at 1969.941 kb on + strand at 1970.141 kb on - strand, within DvMF_1598 at 1970.360 kb on - strand, within DvMF_1598 at 1970.541 kb on - strand at 1970.588 kb on + strand at 1970.892 kb on - strand, within DvMF_1599 at 1971.037 kb on + strand at 1971.042 kb on + strand at 1971.344 kb on + strand, within DvMF_1600 at 1971.548 kb on - strand, within DvMF_1601
Per-strain Table
Position Strand Gene LocusTag Fraction 10 day starvation, 37C remove 1,969,124 - DvMF_1597 0.36 -3.5 1,969,174 - DvMF_1597 0.41 -2.4 1,969,261 + DvMF_1597 0.50 -0.9 1,969,344 - DvMF_1597 0.59 -0.9 1,969,416 - DvMF_1597 0.66 -1.3 1,969,661 - -1.4 1,969,749 + +0.3 1,969,941 + -0.8 1,970,141 - DvMF_1598 0.31 -2.9 1,970,360 - DvMF_1598 0.66 -0.4 1,970,541 - +0.1 1,970,588 + -0.8 1,970,892 - DvMF_1599 0.63 -1.4 1,971,037 + -0.6 1,971,042 + -0.2 1,971,344 + DvMF_1600 0.85 +0.5 1,971,548 - DvMF_1601 0.11 -0.8
Or see this region's nucleotide sequence