Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1428

Experiment: 10 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1427 and DvMF_1428 are separated by 334 nucleotidesDvMF_1428 and DvMF_1429 are separated by 424 nucleotides DvMF_1427: DvMF_1427 - metal dependent phosphohydrolase (RefSeq), at 1,746,161 to 1,747,486 _1427 DvMF_1428: DvMF_1428 - acyl-ACP thioesterase (RefSeq), at 1,747,821 to 1,748,777 _1428 DvMF_1429: DvMF_1429 - transcriptional regulator, MarR family (RefSeq), at 1,749,202 to 1,749,798 _1429 Position (kb) 1747 1748 1749Strain fitness (log2 ratio) -1 0 1 2at 1746.842 kb on + strand, within DvMF_1427at 1746.893 kb on + strand, within DvMF_1427at 1746.928 kb on + strand, within DvMF_1427at 1746.995 kb on - strand, within DvMF_1427at 1746.997 kb on + strand, within DvMF_1427at 1747.312 kb on + strand, within DvMF_1427at 1747.450 kb on - strandat 1747.595 kb on - strandat 1747.625 kb on - strandat 1747.648 kb on - strandat 1747.927 kb on + strand, within DvMF_1428at 1748.013 kb on - strand, within DvMF_1428at 1748.239 kb on - strand, within DvMF_1428at 1748.374 kb on + strand, within DvMF_1428at 1748.619 kb on + strand, within DvMF_1428at 1748.813 kb on + strandat 1748.994 kb on + strandat 1749.011 kb on + strandat 1749.011 kb on + strandat 1749.011 kb on + strandat 1749.011 kb on + strandat 1749.052 kb on - strandat 1749.096 kb on - strandat 1749.117 kb on + strandat 1749.127 kb on + strandat 1749.142 kb on - strandat 1749.268 kb on + strand, within DvMF_1429at 1749.428 kb on + strand, within DvMF_1429at 1749.493 kb on - strand, within DvMF_1429at 1749.617 kb on + strand, within DvMF_1429at 1749.636 kb on + strand, within DvMF_1429at 1749.718 kb on + strand, within DvMF_1429

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Per-strain Table

Position Strand Gene LocusTag Fraction 10 day starvation, 37C
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1,746,842 + DvMF_1427 0.51 +0.3
1,746,893 + DvMF_1427 0.55 +1.9
1,746,928 + DvMF_1427 0.58 +0.8
1,746,995 - DvMF_1427 0.63 +0.4
1,746,997 + DvMF_1427 0.63 +0.6
1,747,312 + DvMF_1427 0.87 +0.3
1,747,450 - +0.7
1,747,595 - +0.6
1,747,625 - -0.3
1,747,648 - +0.4
1,747,927 + DvMF_1428 0.11 +0.6
1,748,013 - DvMF_1428 0.20 +0.3
1,748,239 - DvMF_1428 0.44 +0.8
1,748,374 + DvMF_1428 0.58 +1.1
1,748,619 + DvMF_1428 0.83 +0.3
1,748,813 + +0.4
1,748,994 + +0.3
1,749,011 + +0.5
1,749,011 + +1.0
1,749,011 + +0.5
1,749,011 + +0.5
1,749,052 - +0.7
1,749,096 - +0.1
1,749,117 + -0.0
1,749,127 + +0.6
1,749,142 - +0.7
1,749,268 + DvMF_1429 0.11 +0.4
1,749,428 + DvMF_1429 0.38 +0.6
1,749,493 - DvMF_1429 0.49 +0.4
1,749,617 + DvMF_1429 0.70 -0.4
1,749,636 + DvMF_1429 0.73 +0.4
1,749,718 + DvMF_1429 0.86 +0.2

Or see this region's nucleotide sequence