Experiment: 10 day starvation, 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1427 and DvMF_1428 are separated by 334 nucleotides DvMF_1428 and DvMF_1429 are separated by 424 nucleotides
DvMF_1427: DvMF_1427 - metal dependent phosphohydrolase (RefSeq), at 1,746,161 to 1,747,486
_1427
DvMF_1428: DvMF_1428 - acyl-ACP thioesterase (RefSeq), at 1,747,821 to 1,748,777
_1428
DvMF_1429: DvMF_1429 - transcriptional regulator, MarR family (RefSeq), at 1,749,202 to 1,749,798
_1429
Position (kb)
1747
1748
1749 Strain fitness (log2 ratio)
-1
0
1
2 at 1746.842 kb on + strand, within DvMF_1427 at 1746.893 kb on + strand, within DvMF_1427 at 1746.928 kb on + strand, within DvMF_1427 at 1746.995 kb on - strand, within DvMF_1427 at 1746.997 kb on + strand, within DvMF_1427 at 1747.312 kb on + strand, within DvMF_1427 at 1747.450 kb on - strand at 1747.595 kb on - strand at 1747.625 kb on - strand at 1747.648 kb on - strand at 1747.927 kb on + strand, within DvMF_1428 at 1748.013 kb on - strand, within DvMF_1428 at 1748.239 kb on - strand, within DvMF_1428 at 1748.374 kb on + strand, within DvMF_1428 at 1748.619 kb on + strand, within DvMF_1428 at 1748.813 kb on + strand at 1748.994 kb on + strand at 1749.011 kb on + strand at 1749.011 kb on + strand at 1749.011 kb on + strand at 1749.011 kb on + strand at 1749.052 kb on - strand at 1749.096 kb on - strand at 1749.117 kb on + strand at 1749.127 kb on + strand at 1749.142 kb on - strand at 1749.268 kb on + strand, within DvMF_1429 at 1749.428 kb on + strand, within DvMF_1429 at 1749.493 kb on - strand, within DvMF_1429 at 1749.617 kb on + strand, within DvMF_1429 at 1749.636 kb on + strand, within DvMF_1429 at 1749.718 kb on + strand, within DvMF_1429
Per-strain Table
Position Strand Gene LocusTag Fraction 10 day starvation, 37C remove 1,746,842 + DvMF_1427 0.51 +0.3 1,746,893 + DvMF_1427 0.55 +1.9 1,746,928 + DvMF_1427 0.58 +0.8 1,746,995 - DvMF_1427 0.63 +0.4 1,746,997 + DvMF_1427 0.63 +0.6 1,747,312 + DvMF_1427 0.87 +0.3 1,747,450 - +0.7 1,747,595 - +0.6 1,747,625 - -0.3 1,747,648 - +0.4 1,747,927 + DvMF_1428 0.11 +0.6 1,748,013 - DvMF_1428 0.20 +0.3 1,748,239 - DvMF_1428 0.44 +0.8 1,748,374 + DvMF_1428 0.58 +1.1 1,748,619 + DvMF_1428 0.83 +0.3 1,748,813 + +0.4 1,748,994 + +0.3 1,749,011 + +0.5 1,749,011 + +1.0 1,749,011 + +0.5 1,749,011 + +0.5 1,749,052 - +0.7 1,749,096 - +0.1 1,749,117 + -0.0 1,749,127 + +0.6 1,749,142 - +0.7 1,749,268 + DvMF_1429 0.11 +0.4 1,749,428 + DvMF_1429 0.38 +0.6 1,749,493 - DvMF_1429 0.49 +0.4 1,749,617 + DvMF_1429 0.70 -0.4 1,749,636 + DvMF_1429 0.73 +0.4 1,749,718 + DvMF_1429 0.86 +0.2
Or see this region's nucleotide sequence