Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1422

Experiment: 10 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1420 and DvMF_1421 are separated by 285 nucleotidesDvMF_1421 and DvMF_1422 are separated by 131 nucleotidesDvMF_1422 and DvMF_1423 are separated by 130 nucleotides DvMF_1420: DvMF_1420 - MltA domain protein (RefSeq), at 1,737,018 to 1,738,172 _1420 DvMF_1421: DvMF_1421 - thioesterase superfamily protein (RefSeq), at 1,738,458 to 1,738,868 _1421 DvMF_1422: DvMF_1422 - amidohydrolase 2 (RefSeq), at 1,739,000 to 1,739,821 _1422 DvMF_1423: DvMF_1423 - hypothetical protein (RefSeq), at 1,739,952 to 1,740,854 _1423 Position (kb) 1738 1739 1740Strain fitness (log2 ratio) -3 -2 -1 0 1at 1738.260 kb on - strandat 1738.353 kb on + strandat 1738.366 kb on + strandat 1738.387 kb on + strandat 1738.439 kb on + strandat 1738.578 kb on + strand, within DvMF_1421at 1738.978 kb on - strandat 1739.153 kb on + strand, within DvMF_1422at 1739.156 kb on - strand, within DvMF_1422at 1739.673 kb on + strand, within DvMF_1422at 1739.782 kb on - strandat 1739.888 kb on - strandat 1739.937 kb on + strandat 1739.937 kb on + strandat 1740.171 kb on - strand, within DvMF_1423at 1740.178 kb on + strand, within DvMF_1423at 1740.247 kb on - strand, within DvMF_1423at 1740.358 kb on + strand, within DvMF_1423at 1740.358 kb on + strand, within DvMF_1423at 1740.358 kb on + strand, within DvMF_1423at 1740.489 kb on + strand, within DvMF_1423at 1740.570 kb on - strand, within DvMF_1423at 1740.813 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 10 day starvation, 37C
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1,738,260 - +0.6
1,738,353 + +0.7
1,738,366 + -1.4
1,738,387 + +0.7
1,738,439 + +0.6
1,738,578 + DvMF_1421 0.29 +0.4
1,738,978 - +0.6
1,739,153 + DvMF_1422 0.19 +0.4
1,739,156 - DvMF_1422 0.19 +0.9
1,739,673 + DvMF_1422 0.82 +0.3
1,739,782 - +0.8
1,739,888 - +0.5
1,739,937 + +0.6
1,739,937 + -0.3
1,740,171 - DvMF_1423 0.24 +0.1
1,740,178 + DvMF_1423 0.25 -3.0
1,740,247 - DvMF_1423 0.33 -0.3
1,740,358 + DvMF_1423 0.45 +0.2
1,740,358 + DvMF_1423 0.45 +0.1
1,740,358 + DvMF_1423 0.45 +0.9
1,740,489 + DvMF_1423 0.59 +0.7
1,740,570 - DvMF_1423 0.68 -0.2
1,740,813 - -0.8

Or see this region's nucleotide sequence