Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1410

Experiment: 10 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1409 and DvMF_1410 are separated by 345 nucleotidesDvMF_1410 and DvMF_1411 are separated by 423 nucleotides DvMF_1409: DvMF_1409 - UspA domain protein (RefSeq), at 1,723,103 to 1,723,525 _1409 DvMF_1410: DvMF_1410 - Shikimate kinase (RefSeq), at 1,723,871 to 1,724,404 _1410 DvMF_1411: DvMF_1411 - aminotransferase class I and II (RefSeq), at 1,724,828 to 1,726,012 _1411 Position (kb) 1723 1724 1725Strain fitness (log2 ratio) -1 0 1at 1723.031 kb on + strandat 1723.053 kb on + strandat 1723.053 kb on + strandat 1723.130 kb on - strandat 1723.389 kb on - strand, within DvMF_1409at 1723.426 kb on + strand, within DvMF_1409at 1723.846 kb on + strandat 1724.418 kb on - strandat 1724.498 kb on + strandat 1724.589 kb on + strandat 1724.861 kb on + strandat 1724.892 kb on + strandat 1725.021 kb on - strand, within DvMF_1411at 1725.209 kb on + strand, within DvMF_1411at 1725.395 kb on + strand, within DvMF_1411

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Per-strain Table

Position Strand Gene LocusTag Fraction 10 day starvation, 37C
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1,723,031 + +0.4
1,723,053 + -1.1
1,723,053 + +0.7
1,723,130 - -0.0
1,723,389 - DvMF_1409 0.68 +0.1
1,723,426 + DvMF_1409 0.76 +0.7
1,723,846 + -0.0
1,724,418 - +0.6
1,724,498 + +0.4
1,724,589 + -0.3
1,724,861 + +1.5
1,724,892 + +0.3
1,725,021 - DvMF_1411 0.16 +1.5
1,725,209 + DvMF_1411 0.32 +0.7
1,725,395 + DvMF_1411 0.48 +0.1

Or see this region's nucleotide sequence