Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1406

Experiment: 10 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1405 and DvMF_1406 are separated by 9 nucleotidesDvMF_1406 and DvMF_1407 are separated by 21 nucleotides DvMF_1405: DvMF_1405 - hypothetical protein (RefSeq), at 1,718,357 to 1,718,824 _1405 DvMF_1406: DvMF_1406 - OmpA/MotB domain protein (RefSeq), at 1,718,834 to 1,719,418 _1406 DvMF_1407: DvMF_1407 - metal dependent phosphohydrolase (RefSeq), at 1,719,440 to 1,721,515 _1407 Position (kb) 1718 1719 1720Strain fitness (log2 ratio) -1 0 1 2at 1718.426 kb on - strand, within DvMF_1405at 1718.642 kb on + strand, within DvMF_1405at 1718.709 kb on - strand, within DvMF_1405at 1718.845 kb on + strandat 1718.865 kb on + strandat 1718.896 kb on - strand, within DvMF_1406at 1718.958 kb on + strand, within DvMF_1406at 1719.024 kb on + strand, within DvMF_1406at 1719.470 kb on - strandat 1719.566 kb on - strandat 1719.598 kb on + strandat 1719.878 kb on - strand, within DvMF_1407at 1720.075 kb on - strand, within DvMF_1407at 1720.156 kb on + strand, within DvMF_1407at 1720.169 kb on - strand, within DvMF_1407at 1720.238 kb on - strand, within DvMF_1407at 1720.276 kb on - strand, within DvMF_1407

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Per-strain Table

Position Strand Gene LocusTag Fraction 10 day starvation, 37C
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1,718,426 - DvMF_1405 0.15 +0.1
1,718,642 + DvMF_1405 0.61 -0.2
1,718,709 - DvMF_1405 0.75 -0.1
1,718,845 + -0.4
1,718,865 + +0.2
1,718,896 - DvMF_1406 0.11 +0.1
1,718,958 + DvMF_1406 0.21 -0.2
1,719,024 + DvMF_1406 0.32 -0.3
1,719,470 - +0.6
1,719,566 - +0.5
1,719,598 + +0.1
1,719,878 - DvMF_1407 0.21 -0.5
1,720,075 - DvMF_1407 0.31 +0.6
1,720,156 + DvMF_1407 0.34 -0.4
1,720,169 - DvMF_1407 0.35 +0.4
1,720,238 - DvMF_1407 0.38 -0.2
1,720,276 - DvMF_1407 0.40 +2.3

Or see this region's nucleotide sequence