Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1340

Experiment: 10 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1339 and DvMF_1340 are separated by 181 nucleotidesDvMF_1340 and DvMF_1341 are separated by 141 nucleotides DvMF_1339: DvMF_1339 - molybdenum cofactor synthesis domain protein (RefSeq), at 1,634,497 to 1,635,312 _1339 DvMF_1340: DvMF_1340 - hypothetical protein (RefSeq), at 1,635,494 to 1,635,907 _1340 DvMF_1341: DvMF_1341 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 1,636,049 to 1,636,786 _1341 Position (kb) 1635 1636Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1634.608 kb on + strand, within DvMF_1339at 1635.161 kb on - strand, within DvMF_1339at 1635.195 kb on - strand, within DvMF_1339at 1635.422 kb on + strandat 1635.595 kb on + strand, within DvMF_1340at 1635.676 kb on + strand, within DvMF_1340at 1635.684 kb on - strand, within DvMF_1340at 1636.017 kb on + strandat 1636.119 kb on - strandat 1636.726 kb on + strandat 1636.745 kb on - strandat 1636.879 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 10 day starvation, 37C
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1,634,608 + DvMF_1339 0.14 -4.2
1,635,161 - DvMF_1339 0.81 -2.7
1,635,195 - DvMF_1339 0.86 -0.1
1,635,422 + +0.6
1,635,595 + DvMF_1340 0.24 -3.3
1,635,676 + DvMF_1340 0.44 -3.1
1,635,684 - DvMF_1340 0.46 -2.3
1,636,017 + +0.2
1,636,119 - +0.8
1,636,726 + +2.2
1,636,745 - +0.1
1,636,879 - +0.1

Or see this region's nucleotide sequence