Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1203

Experiment: 10 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1202 and DvMF_1203 are separated by 225 nucleotidesDvMF_1203 and DvMF_1204 are separated by 210 nucleotides DvMF_1202: DvMF_1202 - hypothetical protein (RefSeq), at 1,481,117 to 1,481,743 _1202 DvMF_1203: DvMF_1203 - protein of unknown function DUF81 (RefSeq), at 1,481,969 to 1,482,766 _1203 DvMF_1204: DvMF_1204 - FMN-dependent alpha-hydroxy acid dehydrogenase (RefSeq), at 1,482,977 to 1,483,996 _1204 Position (kb) 1481 1482 1483Strain fitness (log2 ratio) -2 -1 0 1 2at 1481.144 kb on - strandat 1481.398 kb on + strand, within DvMF_1202at 1481.414 kb on - strand, within DvMF_1202at 1481.461 kb on - strand, within DvMF_1202at 1481.538 kb on - strand, within DvMF_1202at 1481.580 kb on - strand, within DvMF_1202at 1481.620 kb on + strand, within DvMF_1202at 1482.003 kb on + strandat 1482.160 kb on - strand, within DvMF_1203at 1482.177 kb on + strand, within DvMF_1203at 1482.260 kb on - strand, within DvMF_1203at 1482.383 kb on - strand, within DvMF_1203at 1482.477 kb on + strand, within DvMF_1203at 1482.546 kb on + strand, within DvMF_1203at 1482.546 kb on + strand, within DvMF_1203at 1482.806 kb on - strandat 1483.045 kb on - strandat 1483.316 kb on + strand, within DvMF_1204at 1483.383 kb on + strand, within DvMF_1204at 1483.391 kb on - strand, within DvMF_1204at 1483.473 kb on + strand, within DvMF_1204at 1483.758 kb on + strand, within DvMF_1204at 1483.763 kb on + strand, within DvMF_1204at 1483.766 kb on - strand, within DvMF_1204

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Per-strain Table

Position Strand Gene LocusTag Fraction 10 day starvation, 37C
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1,481,144 - -0.5
1,481,398 + DvMF_1202 0.45 +1.7
1,481,414 - DvMF_1202 0.47 +1.1
1,481,461 - DvMF_1202 0.55 +0.2
1,481,538 - DvMF_1202 0.67 +0.9
1,481,580 - DvMF_1202 0.74 +0.5
1,481,620 + DvMF_1202 0.80 -0.4
1,482,003 + +0.7
1,482,160 - DvMF_1203 0.24 +0.3
1,482,177 + DvMF_1203 0.26 +0.8
1,482,260 - DvMF_1203 0.36 +0.5
1,482,383 - DvMF_1203 0.52 +1.4
1,482,477 + DvMF_1203 0.64 -0.8
1,482,546 + DvMF_1203 0.72 +0.1
1,482,546 + DvMF_1203 0.72 -0.2
1,482,806 - +2.5
1,483,045 - -1.8
1,483,316 + DvMF_1204 0.33 -1.8
1,483,383 + DvMF_1204 0.40 -2.0
1,483,391 - DvMF_1204 0.41 -0.6
1,483,473 + DvMF_1204 0.49 -0.1
1,483,758 + DvMF_1204 0.77 +0.3
1,483,763 + DvMF_1204 0.77 -1.5
1,483,766 - DvMF_1204 0.77 -2.3

Or see this region's nucleotide sequence