Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1201

Experiment: 10 day starvation, 37C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1200 and DvMF_1201 are separated by 151 nucleotidesDvMF_1201 and DvMF_1202 are separated by 505 nucleotides DvMF_1200: DvMF_1200 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 1,478,460 to 1,479,596 _1200 DvMF_1201: DvMF_1201 - protein of unknown function DUF161 (RefSeq), at 1,479,748 to 1,480,611 _1201 DvMF_1202: DvMF_1202 - hypothetical protein (RefSeq), at 1,481,117 to 1,481,743 _1202 Position (kb) 1479 1480 1481Strain fitness (log2 ratio) -1 0 1at 1478.950 kb on + strand, within DvMF_1200at 1479.279 kb on + strand, within DvMF_1200at 1479.472 kb on - strand, within DvMF_1200at 1480.117 kb on + strand, within DvMF_1201at 1480.274 kb on + strand, within DvMF_1201at 1480.415 kb on - strand, within DvMF_1201at 1480.459 kb on - strand, within DvMF_1201at 1480.583 kb on + strandat 1480.844 kb on + strandat 1480.945 kb on + strandat 1480.953 kb on - strandat 1481.144 kb on - strandat 1481.398 kb on + strand, within DvMF_1202at 1481.414 kb on - strand, within DvMF_1202at 1481.461 kb on - strand, within DvMF_1202at 1481.538 kb on - strand, within DvMF_1202at 1481.580 kb on - strand, within DvMF_1202

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 10 day starvation, 37C
remove
1,478,950 + DvMF_1200 0.43 +0.3
1,479,279 + DvMF_1200 0.72 +0.3
1,479,472 - DvMF_1200 0.89 -1.1
1,480,117 + DvMF_1201 0.43 +0.8
1,480,274 + DvMF_1201 0.61 +0.3
1,480,415 - DvMF_1201 0.77 +0.6
1,480,459 - DvMF_1201 0.82 +0.3
1,480,583 + +0.3
1,480,844 + +0.2
1,480,945 + +1.0
1,480,953 - +0.3
1,481,144 - -0.5
1,481,398 + DvMF_1202 0.45 +1.7
1,481,414 - DvMF_1202 0.47 +1.1
1,481,461 - DvMF_1202 0.55 +0.2
1,481,538 - DvMF_1202 0.67 +0.9
1,481,580 - DvMF_1202 0.74 +0.5

Or see this region's nucleotide sequence