Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1134

Experiment: 10 day starvation, 37C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1132 and DvMF_1133 are separated by 106 nucleotidesDvMF_1133 and DvMF_1134 are separated by 182 nucleotidesDvMF_1134 and DvMF_1135 are separated by 375 nucleotides DvMF_1132: DvMF_1132 - pseudouridine synthase (RefSeq), at 1,389,000 to 1,390,391 _1132 DvMF_1133: DvMF_1133 - hypothetical protein (RefSeq), at 1,390,498 to 1,391,184 _1133 DvMF_1134: DvMF_1134 - single-stranded-DNA-specific exonuclease RecJ (RefSeq), at 1,391,367 to 1,393,082 _1134 DvMF_1135: DvMF_1135 - metal dependent phosphohydrolase (RefSeq), at 1,393,458 to 1,394,480 _1135 Position (kb) 1391 1392 1393 1394Strain fitness (log2 ratio) -1 0 1at 1390.558 kb on - strandat 1390.624 kb on - strand, within DvMF_1133at 1390.695 kb on - strand, within DvMF_1133at 1390.746 kb on + strand, within DvMF_1133at 1391.254 kb on + strandat 1391.262 kb on - strandat 1391.327 kb on - strandat 1391.391 kb on + strandat 1391.435 kb on + strandat 1391.437 kb on + strandat 1391.437 kb on + strandat 1391.850 kb on - strand, within DvMF_1134at 1391.901 kb on + strand, within DvMF_1134at 1391.911 kb on + strand, within DvMF_1134at 1392.000 kb on - strand, within DvMF_1134at 1392.237 kb on - strand, within DvMF_1134at 1392.500 kb on + strand, within DvMF_1134at 1392.603 kb on - strand, within DvMF_1134at 1392.778 kb on + strand, within DvMF_1134at 1392.778 kb on + strand, within DvMF_1134at 1392.791 kb on + strand, within DvMF_1134at 1392.832 kb on + strand, within DvMF_1134at 1392.936 kb on + strandat 1393.039 kb on - strandat 1393.088 kb on + strandat 1393.154 kb on + strandat 1393.162 kb on - strandat 1393.172 kb on - strandat 1393.172 kb on - strandat 1393.213 kb on + strandat 1393.571 kb on - strand, within DvMF_1135at 1393.636 kb on + strand, within DvMF_1135

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 10 day starvation, 37C
remove
1,390,558 - +0.5
1,390,624 - DvMF_1133 0.18 +0.7
1,390,695 - DvMF_1133 0.29 +1.0
1,390,746 + DvMF_1133 0.36 +0.9
1,391,254 + +1.0
1,391,262 - -0.0
1,391,327 - -0.2
1,391,391 + -1.7
1,391,435 + +0.2
1,391,437 + -0.3
1,391,437 + -0.7
1,391,850 - DvMF_1134 0.28 -0.1
1,391,901 + DvMF_1134 0.31 -0.8
1,391,911 + DvMF_1134 0.32 +0.0
1,392,000 - DvMF_1134 0.37 -1.3
1,392,237 - DvMF_1134 0.51 -0.3
1,392,500 + DvMF_1134 0.66 +1.2
1,392,603 - DvMF_1134 0.72 -0.2
1,392,778 + DvMF_1134 0.82 -0.4
1,392,778 + DvMF_1134 0.82 -0.2
1,392,791 + DvMF_1134 0.83 -0.6
1,392,832 + DvMF_1134 0.85 -0.5
1,392,936 + +0.2
1,393,039 - -0.2
1,393,088 + -0.3
1,393,154 + +0.2
1,393,162 - +0.6
1,393,172 - +0.7
1,393,172 - -1.4
1,393,213 + +0.2
1,393,571 - DvMF_1135 0.11 +1.4
1,393,636 + DvMF_1135 0.17 +1.6

Or see this region's nucleotide sequence