Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1005

Experiment: 10 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1003 and DvMF_1004 overlap by 7 nucleotidesDvMF_1004 and DvMF_1005 are separated by 71 nucleotidesDvMF_1005 and DvMF_1006 are separated by 41 nucleotides DvMF_1003: DvMF_1003 - hypothetical protein (RefSeq), at 1,218,875 to 1,219,492 _1003 DvMF_1004: DvMF_1004 - short-chain dehydrogenase/reductase SDR (RefSeq), at 1,219,486 to 1,220,316 _1004 DvMF_1005: DvMF_1005 - acyl carrier protein, putative (RefSeq), at 1,220,388 to 1,220,801 _1005 DvMF_1006: DvMF_1006 - Beta-ketoacyl synthase (RefSeq), at 1,220,843 to 1,222,219 _1006 Position (kb) 1220 1221Strain fitness (log2 ratio) -1 0 1at 1219.424 kb on - strand, within DvMF_1003at 1219.506 kb on + strandat 1219.523 kb on + strandat 1219.523 kb on + strandat 1219.803 kb on - strand, within DvMF_1004at 1220.050 kb on + strand, within DvMF_1004at 1220.058 kb on - strand, within DvMF_1004at 1220.058 kb on - strand, within DvMF_1004at 1220.264 kb on + strandat 1220.282 kb on - strandat 1220.399 kb on + strandat 1220.437 kb on - strand, within DvMF_1005at 1220.927 kb on + strandat 1221.083 kb on - strand, within DvMF_1006at 1221.229 kb on + strand, within DvMF_1006at 1221.309 kb on + strand, within DvMF_1006at 1221.409 kb on + strand, within DvMF_1006at 1221.412 kb on - strand, within DvMF_1006at 1221.456 kb on - strand, within DvMF_1006at 1221.582 kb on + strand, within DvMF_1006

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Per-strain Table

Position Strand Gene LocusTag Fraction 10 day starvation, 37C
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1,219,424 - DvMF_1003 0.89 +0.0
1,219,506 + +1.7
1,219,523 + +0.2
1,219,523 + +0.6
1,219,803 - DvMF_1004 0.38 +0.5
1,220,050 + DvMF_1004 0.68 +1.2
1,220,058 - DvMF_1004 0.69 +1.6
1,220,058 - DvMF_1004 0.69 +1.3
1,220,264 + +0.5
1,220,282 - -1.1
1,220,399 + -0.1
1,220,437 - DvMF_1005 0.12 +1.6
1,220,927 + +1.1
1,221,083 - DvMF_1006 0.17 -0.3
1,221,229 + DvMF_1006 0.28 +0.6
1,221,309 + DvMF_1006 0.34 +0.5
1,221,409 + DvMF_1006 0.41 +1.2
1,221,412 - DvMF_1006 0.41 +0.1
1,221,456 - DvMF_1006 0.45 +0.6
1,221,582 + DvMF_1006 0.54 +1.1

Or see this region's nucleotide sequence