Experiment: 10 day starvation, 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0920 and DvMF_0921 overlap by 4 nucleotides DvMF_0921 and DvMF_0922 are separated by 3 nucleotides DvMF_0922 and DvMF_0923 are separated by 13 nucleotides
DvMF_0920: DvMF_0920 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,112,010 to 1,113,041
_0920
DvMF_0921: DvMF_0921 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,113,038 to 1,113,892
_0921
DvMF_0922: DvMF_0922 - hypothetical protein (RefSeq), at 1,113,896 to 1,115,659
_0922
DvMF_0923: DvMF_0923 - SMC domain protein (RefSeq), at 1,115,673 to 1,117,325
_0923
Position (kb)
1113
1114
1115
1116 Strain fitness (log2 ratio)
-1
0
1 at 1113.063 kb on - strand at 1113.105 kb on + strand at 1113.406 kb on + strand, within DvMF_0921 at 1113.540 kb on + strand, within DvMF_0921 at 1113.695 kb on + strand, within DvMF_0921 at 1113.703 kb on - strand, within DvMF_0921 at 1113.728 kb on + strand, within DvMF_0921 at 1114.103 kb on - strand, within DvMF_0922 at 1114.203 kb on - strand, within DvMF_0922 at 1114.203 kb on - strand, within DvMF_0922 at 1114.285 kb on - strand, within DvMF_0922 at 1114.515 kb on + strand, within DvMF_0922 at 1114.592 kb on - strand, within DvMF_0922 at 1114.623 kb on + strand, within DvMF_0922 at 1114.706 kb on + strand, within DvMF_0922 at 1114.791 kb on - strand, within DvMF_0922 at 1115.085 kb on + strand, within DvMF_0922 at 1115.315 kb on - strand, within DvMF_0922 at 1115.393 kb on + strand, within DvMF_0922 at 1115.489 kb on + strand at 1115.653 kb on + strand at 1115.772 kb on + strand at 1116.266 kb on + strand, within DvMF_0923 at 1116.351 kb on - strand, within DvMF_0923 at 1116.360 kb on + strand, within DvMF_0923
Per-strain Table
Position Strand Gene LocusTag Fraction 10 day starvation, 37C remove 1,113,063 - +0.3 1,113,105 + +0.2 1,113,406 + DvMF_0921 0.43 +1.5 1,113,540 + DvMF_0921 0.59 -0.1 1,113,695 + DvMF_0921 0.77 +1.1 1,113,703 - DvMF_0921 0.78 -1.3 1,113,728 + DvMF_0921 0.81 +0.2 1,114,103 - DvMF_0922 0.12 -0.9 1,114,203 - DvMF_0922 0.17 +0.7 1,114,203 - DvMF_0922 0.17 +1.0 1,114,285 - DvMF_0922 0.22 +0.6 1,114,515 + DvMF_0922 0.35 +0.6 1,114,592 - DvMF_0922 0.39 +0.9 1,114,623 + DvMF_0922 0.41 +0.5 1,114,706 + DvMF_0922 0.46 +0.6 1,114,791 - DvMF_0922 0.51 +1.1 1,115,085 + DvMF_0922 0.67 +0.3 1,115,315 - DvMF_0922 0.80 +1.1 1,115,393 + DvMF_0922 0.85 -0.2 1,115,489 + -0.3 1,115,653 + +0.7 1,115,772 + +0.3 1,116,266 + DvMF_0923 0.36 +0.1 1,116,351 - DvMF_0923 0.41 -1.1 1,116,360 + DvMF_0923 0.42 -1.1
Or see this region's nucleotide sequence