Experiment: 10 day starvation, 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0566 and DvMF_0567 are separated by 448 nucleotides DvMF_0567 and DvMF_0568 are separated by 196 nucleotides DvMF_0568 and DvMF_0569 are separated by 66 nucleotides
DvMF_0566: DvMF_0566 - peptidyl-prolyl cis-trans isomerase cyclophilin type (RefSeq), at 667,820 to 668,419
_0566
DvMF_0567: DvMF_0567 - ATP-dependent chaperone ClpB (RefSeq), at 668,868 to 671,456
_0567
DvMF_0568: DvMF_0568 - hypothetical protein (RefSeq), at 671,653 to 672,003
_0568
DvMF_0569: DvMF_0569 - chaperone DnaJ domain protein (RefSeq), at 672,070 to 673,026
_0569
Position (kb) 668
669
670
671
672 Strain fitness (log2 ratio) -2
-1
0
1 at 667.891 kb on + strand, within DvMF_0566 at 667.914 kb on + strand, within DvMF_0566 at 667.922 kb on - strand, within DvMF_0566 at 667.922 kb on - strand, within DvMF_0566 at 667.922 kb on - strand, within DvMF_0566 at 668.064 kb on - strand, within DvMF_0566 at 668.637 kb on - strand at 668.652 kb on - strand at 668.657 kb on - strand at 668.929 kb on - strand at 668.940 kb on - strand at 669.288 kb on + strand, within DvMF_0567 at 669.366 kb on + strand, within DvMF_0567 at 669.502 kb on + strand, within DvMF_0567 at 669.603 kb on - strand, within DvMF_0567 at 669.964 kb on + strand, within DvMF_0567 at 670.008 kb on - strand, within DvMF_0567 at 670.186 kb on + strand, within DvMF_0567 at 670.194 kb on - strand, within DvMF_0567 at 670.247 kb on - strand, within DvMF_0567 at 670.540 kb on + strand, within DvMF_0567 at 670.714 kb on + strand, within DvMF_0567 at 670.714 kb on + strand, within DvMF_0567 at 670.722 kb on - strand, within DvMF_0567 at 670.751 kb on - strand, within DvMF_0567 at 670.832 kb on + strand, within DvMF_0567 at 671.073 kb on + strand, within DvMF_0567 at 671.118 kb on - strand, within DvMF_0567 at 671.148 kb on - strand, within DvMF_0567 at 671.247 kb on + strand at 671.644 kb on + strand at 671.664 kb on + strand at 671.730 kb on + strand, within DvMF_0568 at 671.738 kb on - strand, within DvMF_0568 at 671.738 kb on - strand, within DvMF_0568 at 671.835 kb on + strand, within DvMF_0568 at 671.850 kb on + strand, within DvMF_0568 at 671.878 kb on + strand, within DvMF_0568 at 671.975 kb on - strand at 672.204 kb on - strand, within DvMF_0569 at 672.395 kb on - strand, within DvMF_0569
Per-strain Table
Position Strand Gene LocusTag Fraction 10 day starvation, 37C remove 667,891 + DvMF_0566 0.12 +0.4 667,914 + DvMF_0566 0.16 +0.1 667,922 - DvMF_0566 0.17 +0.5 667,922 - DvMF_0566 0.17 +0.2 667,922 - DvMF_0566 0.17 +0.1 668,064 - DvMF_0566 0.41 +0.4 668,637 - +0.2 668,652 - -0.1 668,657 - +0.5 668,929 - -0.9 668,940 - +0.4 669,288 + DvMF_0567 0.16 -0.8 669,366 + DvMF_0567 0.19 +1.2 669,502 + DvMF_0567 0.24 -0.7 669,603 - DvMF_0567 0.28 -0.8 669,964 + DvMF_0567 0.42 -1.7 670,008 - DvMF_0567 0.44 +1.0 670,186 + DvMF_0567 0.51 +0.3 670,194 - DvMF_0567 0.51 -0.9 670,247 - DvMF_0567 0.53 -0.3 670,540 + DvMF_0567 0.65 +0.1 670,714 + DvMF_0567 0.71 -2.0 670,714 + DvMF_0567 0.71 -1.0 670,722 - DvMF_0567 0.72 -1.6 670,751 - DvMF_0567 0.73 -0.6 670,832 + DvMF_0567 0.76 -0.6 671,073 + DvMF_0567 0.85 -1.2 671,118 - DvMF_0567 0.87 -0.7 671,148 - DvMF_0567 0.88 -0.4 671,247 + -1.4 671,644 + +0.0 671,664 + +0.8 671,730 + DvMF_0568 0.22 +0.5 671,738 - DvMF_0568 0.24 +0.4 671,738 - DvMF_0568 0.24 +0.6 671,835 + DvMF_0568 0.52 +1.6 671,850 + DvMF_0568 0.56 -0.9 671,878 + DvMF_0568 0.64 +1.5 671,975 - +0.3 672,204 - DvMF_0569 0.14 -1.3 672,395 - DvMF_0569 0.34 -2.4
Or see this region's nucleotide sequence